RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 GRTP1Q5TC63 336 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 METTL11BQ5VVY1 283 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 XAF1Q6GPH4 301 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 ZNF767PQ75MW2 155 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 POLNQ7Z5Q5 900 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 UBQLNLQ8IYU4 475 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 SFRP1Q8N474 314 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 CELF2-AS1Q8N7Q2 184 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 TMC2Q8TDI7 906 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 NKD2Q969F2 451 aaPredicted RBP10.23□□□□□ -0.77
VPS39-214ENST00000614932 RPRD1AQ96P16 312 aaPredicted RBP10.23□□□□□ -0.77
VPS39-214ENST00000614932 RBM14Q96PK6 669 aaKnown RBP10.23□□□□□ -0.77
VPS39-214ENST00000614932 RNPEPQ9H4A4 650 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 ADARB2Q9NS39 739 aaKnown RBP10.23□□□□□ -0.77
VPS39-214ENST00000614932 SLC39A1Q9NY26 324 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 DPP7Q9UHL4 492 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 TMEM5Q9Y2B1 443 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 COQ4Q9Y3A0 265 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 STON1Q9Y6Q2 735 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 PMF1-BGLAPU3KQ54 211 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 PTPRFP10586 1907 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 E7ENX8 843 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 ZBTB14O43829 449 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 TOM1L1O75674 476 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 CNMDO75829 334 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 DNAJB5O75953 348 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 C4BPAP04003 597 aaKnown RBP10.23□□□□□ -0.77
VPS39-214ENST00000614932 PRKCBP05771 671 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 WEE2P0C1S8 567 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 RALAP11233 206 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 YBX3P16989 372 aaKnown RBP eCLIP10.23□□□□□ -0.77
VPS39-214ENST00000614932 ITGALP20701 1170 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 MAPK4P31152 587 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 GP5P40197 560 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 YAP1P46937 504 aaKnown RBP10.23□□□□□ -0.77
VPS39-214ENST00000614932 SOX9P48436 509 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 MAPKAPK2P49137 400 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 RGS7P49802 495 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 TFAMQ00059 246 aaKnown RBP10.23□□□□□ -0.77
VPS39-214ENST00000614932 FAM214AQ32MH5 1076 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 NOL9Q5SY16 702 aaKnown RBP10.23□□□□□ -0.77
VPS39-214ENST00000614932 TEDDM1Q5T9Z0 273 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 MAVSQ7Z434 540 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 CDH24Q86UP0 819 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 AMIGO1Q86WK6 493 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 GLIS1Q8NBF1 620 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 DNERQ8NFT8 737 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 PHF10Q8WUB8 498 aaKnown RBP10.23□□□□□ -0.77
VPS39-214ENST00000614932 CYGBQ8WWM9 190 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 SEPT8Q92599 483 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 FAM149B1Q96BN6 582 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 TESCQ96BS2 214 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 SPATA33Q96N06 139 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 MMP19Q99542 508 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 KCTD14Q9BQ13 255 aaPredicted RBP10.23□□□□□ -0.77
VPS39-214ENST00000614932 PITHD1Q9GZP4 211 aaPredicted RBP10.23□□□□□ -0.77
VPS39-214ENST00000614932 SLC6A17Q9H1V8 727 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 C2orf40Q9H1Z8 148 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 ZNF556Q9HAH1 456 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 CD93Q9NPY3 652 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 RBPJLQ9UBG7 517 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 ZC3H7BQ9UGR2 993 aaKnown RBP10.23□□□□□ -0.77
VPS39-214ENST00000614932 ACAD8Q9UKU7 415 aa10.23□□□□□ -0.77
VPS39-214ENST00000614932 TRIM49D1C9J1S8 452 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 TBX1O43435 398 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 CPNE3O75131 537 aaKnown RBP10.22□□□□□ -0.77
VPS39-214ENST00000614932 SEC24AO95486 1093 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 ZSCAN5DPP0CG00 497 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 BMP2P12643 396 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 HOXB3P14651 431 aaPredicted RBP10.22□□□□□ -0.77
VPS39-214ENST00000614932 GLDCP23378 1020 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 SLC7A1P30825 629 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 ARL2P36404 184 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 MRPS5P82675 430 aaKnown RBP10.22□□□□□ -0.77
VPS39-214ENST00000614932 BNC1Q01954 994 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 ZACNQ401N2 412 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 C9orf131Q5VYM1 1079 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 ACAD10Q6JQN1 1059 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 TMEM192Q8IY95 271 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 SVOPQ8N4V2 548 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 BEST2Q8NFU1 509 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 OR8K3Q8NH51 312 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 PROX1Q92786 737 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 PPWD1Q96BP3 646 aaKnown RBP10.22□□□□□ -0.77
VPS39-214ENST00000614932 ACSF2Q96CM8 615 aaPredicted RBP10.22□□□□□ -0.77
VPS39-214ENST00000614932 CDCA5Q96FF9 252 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 FBXL20Q96IG2 436 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 B3GALT6Q96L58 329 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 NRBP2Q9NSY0 501 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 RNF19AQ9NV58 838 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 PCDH10Q9P2E7 1040 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 RNF112Q9ULX5 631 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 PCDHGC3Q9UN70 934 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 PCDHGA7Q9Y5G6 932 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 RGSL1A5PLK6 1076 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 SAC3D1A6NKF1 404 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 PRSS44E7EML9 344 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 GOLGA8SH3BPF8 625 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 ARHGEF9O43307 516 aa10.22□□□□□ -0.77
VPS39-214ENST00000614932 LYPLA1O75608 230 aaPredicted RBP10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms