RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 KANSL1Q7Z3B3 1105 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 PCGF5Q86SE9 256 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 SPATS2Q86XZ4 545 aaKnown RBP12.75□□□□□ -0.37
UPF1-208ENST00000600012 NAT8LQ8N9F0 302 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 EIF1ADQ8N9N8 165 aaKnown RBP12.75□□□□□ -0.37
UPF1-208ENST00000600012 DCAF4L2Q8NA75 395 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 FATE1Q969F0 183 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 FEM1AQ9BSK4 669 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 GLOD4Q9HC38 313 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 UBA2Q9UBT2 640 aaPredicted RBP12.75□□□□□ -0.37
UPF1-208ENST00000600012 MTRF1LQ9UGC7 380 aaKnown RBP12.75□□□□□ -0.37
UPF1-208ENST00000600012 TRHDEQ9UKU6 1024 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 HPCAL4Q9UM19 191 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 SHOC2Q9UQ13 582 aa12.75□□□□□ -0.37
UPF1-208ENST00000600012 E7EVH7 732 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 PRAMEF26H0Y7S4 382 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 CKMT2P17540 419 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 MAT2AP31153 395 aaKnown RBP12.74□□□□□ -0.37
UPF1-208ENST00000600012 TNNT3P45378 269 aaPredicted RBP12.74□□□□□ -0.37
UPF1-208ENST00000600012 LMAN1P49257 510 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 RENBPP51606 427 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 SEMG2Q02383 582 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 CAV1Q03135 178 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 ITKQ08881 620 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 CNTN1Q12860 1018 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 TARDBPQ13148 414 aaKnown RBP eCLIP12.74□□□□□ -0.37
UPF1-208ENST00000600012 ZNF235Q14590 738 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 STAT4Q14765 748 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 DLG2Q15700 870 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 PARP6Q2NL67 630 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 ACCSLQ4AC99 568 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 SETMARQ53H47 684 aaPredicted RBP12.74□□□□□ -0.37
UPF1-208ENST00000600012 BEND6Q5SZJ8 279 aaPredicted RBP12.74□□□□□ -0.37
UPF1-208ENST00000600012 AGBL4Q5VU57 503 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 LRRC69Q6ZNQ3 347 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 HOOK3Q86VS8 718 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 CCDC25Q86WR0 208 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 CACTIN-AS1Q8N1I8 211 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 PGBD5Q8N414 524 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 TEX26Q8N6G2 289 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 PIP4K2CQ8TBX8 421 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 CRELD1Q96HD1 420 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 ZNF599Q96NL3 588 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 UBL7Q96S82 380 aaPredicted RBP12.74□□□□□ -0.37
UPF1-208ENST00000600012 MLPHQ9BV36 600 aaPredicted RBP12.74□□□□□ -0.37
UPF1-208ENST00000600012 CINPQ9BW66 212 aaPredicted RBP12.74□□□□□ -0.37
UPF1-208ENST00000600012 FAM129AQ9BZQ8 928 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 PREBQ9HCU5 417 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 UBP1Q9NZI7 540 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 SARDHQ9UL12 918 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 PPM1HQ9ULR3 514 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 ATP8A1Q9Y2Q0 1164 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 AK5Q9Y6K8 562 aa12.74□□□□□ -0.37
UPF1-208ENST00000600012 TTC24A2A3L6 582 aaPredicted RBP12.73□□□□□ -0.37
UPF1-208ENST00000600012 NDC80O14777 642 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 MUSKO15146 869 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 RRP8O43159 456 aaKnown RBP12.73□□□□□ -0.37
UPF1-208ENST00000600012 RNGTTO60942 597 aaKnown RBP12.73□□□□□ -0.37
UPF1-208ENST00000600012 APRTP07741 180 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 TPSB2P20231 275 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 ACP1P24666 158 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 EIF2S3P41091 472 aaKnown RBP12.73□□□□□ -0.37
UPF1-208ENST00000600012 MAGEA6P43360 314 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 DSC2Q02487 901 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 MTM1Q13496 603 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 OLIG2Q13516 323 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 CYTH1Q15438 398 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 TPSAB1Q15661 275 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 EMBQ6PCB8 327 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 Q6ZVU0 165 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 SH2D3CQ8N5H7 860 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 SPATA22Q8NHS9 363 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 CAVIN3Q969G5 261 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 OXNAD1Q96HP4 312 aaPredicted RBP12.73□□□□□ -0.37
UPF1-208ENST00000600012 EXOC2Q96KP1 924 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 C2orf49Q9BVC5 232 aaPredicted RBP12.73□□□□□ -0.37
UPF1-208ENST00000600012 ARFGAP3Q9NP61 516 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 SEPT3Q9UH03 358 aa12.73□□□□□ -0.37
UPF1-208ENST00000600012 TRPM6Q9BX84 2022 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 TLX3O43711 291 aaPredicted RBP12.72□□□□□ -0.37
UPF1-208ENST00000600012 SDC3O75056 442 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 BANF1O75531 89 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 TMCC1O94876 653 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 CD160O95971 181 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 MT-CYBP00156 380 aaPredicted RBP12.72□□□□□ -0.37
UPF1-208ENST00000600012 ITPKBP27987 946 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 RGRP47804 291 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 NIPAL4Q0D2K0 466 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 CCDC15Q0P6D6 951 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 SPARCL1Q14515 664 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 PRPSAP1Q14558 356 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 PROX2Q3B8N5 592 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 POM121L1PQ3SYA9 428 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 ZNF534Q76KX8 674 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 TMC3Q7Z5M5 1100 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 BBS5Q8N3I7 341 aa12.72□□□□□ -0.37
UPF1-208ENST00000600012 TSEN2Q8NCE0 465 aaKnown RBP12.72□□□□□ -0.37
UPF1-208ENST00000600012 SNIP1Q8TAD8 396 aaKnown RBP12.72□□□□□ -0.37
UPF1-208ENST00000600012 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.72□□□□□ -0.37
UPF1-208ENST00000600012 KLHDC7BQ96G42 594 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms