RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 TMC3Q7Z5M5 1100 aa19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 PRUNE1Q86TP1 453 aa19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 NLRP8Q86W28 1048 aa19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 NAXDQ8IW45 347 aa19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 PRELID2Q8N945 189 aa19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 COG1Q8WTW3 980 aa19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 AGAP2Q99490 1192 aa19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 LGR4Q9BXB1 951 aa19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 PCOLCE2Q9UKZ9 415 aa19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 TTC7AQ9ULT0 858 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-221ENST00000599833 NCOR2Q9Y618 2525 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 GIPC1O14908 333 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 CEP104O60308 925 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 ZNF189O75820 626 aaPredicted RBP19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 AGTP01019 485 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 CSF2P04141 144 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 ITGAVP06756 1048 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 HOXC4P09017 264 aaPredicted RBP19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 NME1P15531 152 aaKnown RBP19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 NFKBIAP25963 317 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 TEAD1P28347 426 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 KIAA1024LP59773 190 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 ARHGEF7Q14155 803 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 ZNF542PQ5EBM4 170 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 ZNF765Q7L2R6 523 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 GATAD2AQ86YP4 633 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 NDUFAF2Q8N183 169 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 SLC25A45Q8N413 288 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 TTC30BQ8N4P2 665 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 OXR1Q8N573 874 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 DEFB124Q8NES8 71 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 IPMKQ8NFU5 416 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 SCAMP4Q969E2 229 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 OSBPL9Q96SU4 736 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 TEX101Q9BY14 249 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 TCEAL2Q9H3H9 227 aaPredicted RBP19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 UCKL1Q9NWZ5 548 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 SMARCAL1Q9NZC9 954 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 CD84Q9UIB8 345 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 ZKSCAN5Q9Y2L8 839 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 ZNF711Q9Y462 761 aa19.47■□□□□ 0.71
SHKBP1-221ENST00000599833 C1orf232A0A0U1RR37 186 aa19.46■□□□□ 0.71
SHKBP1-221ENST00000599833 TMEM202A6NGA9 273 aa19.46■□□□□ 0.71
SHKBP1-221ENST00000599833 ANXA9O76027 345 aa19.46■□□□□ 0.71
SHKBP1-221ENST00000599833 KCNK5O95279 499 aa19.46■□□□□ 0.71
SHKBP1-221ENST00000599833 SPINT3P49223 89 aa19.46■□□□□ 0.71
SHKBP1-221ENST00000599833 GEMP55040 296 aa19.46■□□□□ 0.71
SHKBP1-221ENST00000599833 SNX1Q13596 522 aa19.46■□□□□ 0.71
SHKBP1-221ENST00000599833 NFATC4Q14934 902 aa19.46■□□□□ 0.71
SHKBP1-221ENST00000599833 PARP6Q2NL67 630 aa19.46■□□□□ 0.71
SHKBP1-221ENST00000599833 P3H1Q32P28 736 aa19.46■□□□□ 0.71
SHKBP1-221ENST00000599833 HENMT1Q5T8I9 393 aaKnown RBP19.46■□□□□ 0.71
SHKBP1-221ENST00000599833 PARGQ86W56 976 aa19.46■□□□□ 0.71
SHKBP1-221ENST00000599833 PBKQ96KB5 322 aa19.46■□□□□ 0.71
SHKBP1-221ENST00000599833 NFKBIL1Q9UBC1 381 aaPredicted RBP19.46■□□□□ 0.71
SHKBP1-221ENST00000599833 CNOT6Q9ULM6 557 aaKnown RBP19.46■□□□□ 0.71
SHKBP1-221ENST00000599833 SNX12Q9UMY4 172 aa19.46■□□□□ 0.71
SHKBP1-221ENST00000599833 PLXNB3Q9ULL4 1909 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 KIF5CO60282 957 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 SDC3O75056 442 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 PIAS2O75928 621 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 FUCA1P04066 466 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 ETS1P14921 441 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 HLA-DPA1P20036 260 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 DGKAP23743 735 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 STIP1P31948 543 aaKnown RBP19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 KCTD19Q17RG1 926 aaPredicted RBP19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 ALG11Q2TAA5 492 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 FAXCQ5TGI0 409 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 NRSN1Q8IZ57 195 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 C17orf53Q8N3J3 647 aaPredicted RBP19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 PTCD2Q8WV60 388 aaKnown RBP19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 FERMT1Q9BQL6 677 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 FICDQ9BVA6 458 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 ZFYVE1Q9HBF4 777 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 ARNT2Q9HBZ2 717 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 KCTD5Q9NXV2 234 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 SHOC2Q9UQ13 582 aa19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 DRG1Q9Y295 367 aaKnown RBP19.45■□□□□ 0.7
SHKBP1-221ENST00000599833 CES2O00748 559 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 ZNF185O15231 689 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 YKT6O15498 198 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 FLRT2O43155 660 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 STK10O94804 968 aaKnown RBP19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 FGF1P05230 155 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 ZSCAN5DPP0CG00 497 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 TSHRP16473 764 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 KCNJ1P48048 391 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 ARRB1P49407 418 aaPredicted RBP19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 CYP1B1Q16678 543 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 LONRF2Q1L5Z9 754 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 PAPD7Q5XG87 772 aaKnown RBP19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 TTC27Q6P3X3 843 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 HEATR4Q86WZ0 1026 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 RBFAQ8N0V3 343 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 SLC25A41Q8N5S1 370 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 GPR26Q8NDV2 337 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 ACTRT1Q8TDG2 376 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 COX14Q96I36 57 aa19.44■□□□□ 0.7
SHKBP1-221ENST00000599833 APOL2Q9BQE5 337 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms