RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 TRIM38O00635 465 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 ENC1O14682 589 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 AQP9O43315 295 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 STK10O94804 968 aaKnown RBP13.83□□□□□ -0.2
UPF1-205ENST00000598209 HOXC4P09017 264 aaPredicted RBP13.83□□□□□ -0.2
UPF1-205ENST00000598209 ATXN1LP0C7T5 689 aaKnown RBP13.83□□□□□ -0.2
UPF1-205ENST00000598209 PIRTP0C851 137 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 WNT3AP56704 352 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 DPTQ07507 201 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 ALG11Q2TAA5 492 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 ANKRD20A2Q5SQ80 823 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 ANKRD20A1Q5TYW2 823 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 ANKRD20A3Q5VUR7 823 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 ITPRIPL1Q6GPH6 555 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 RAET1GQ6H3X3 334 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 CCDC70Q6NSX1 233 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 ZNF765Q7L2R6 523 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 SLCO6A1Q86UG4 719 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 HID1Q8IV36 788 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 TRIM58Q8NG06 486 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 OR4C6Q8NH72 309 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 LMX1AQ8TE12 382 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 TSACCQ96A04 125 aaPredicted RBP13.83□□□□□ -0.2
UPF1-205ENST00000598209 LGR4Q9BXB1 951 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 SLC13A1Q9BZW2 595 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 ABCG8Q9H221 673 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 GBA3Q9H227 469 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 USP29Q9HBJ7 922 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 TOR4AQ9NXH8 423 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 SPASTQ9UBP0 616 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 KLQ9UEF7 1012 aa13.83□□□□□ -0.2
UPF1-205ENST00000598209 R3HDM2Q9Y2K5 976 aaKnown RBP13.83□□□□□ -0.2
UPF1-205ENST00000598209 NCOR2Q9Y618 2525 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 LOC285095A0A1B0GVY8 99 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 TMEM202A6NGA9 273 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 SCAMP1O15126 338 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 SIGLEC6O43699 453 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 ZNF189O75820 626 aaPredicted RBP13.82□□□□□ -0.2
UPF1-205ENST00000598209 RASGRP1O95267 797 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 GIMD1P0DJR0 217 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 ALPPL2P10696 532 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 MYCLP1P12525 358 aaPredicted RBP13.82□□□□□ -0.2
UPF1-205ENST00000598209 KELP23276 732 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 TEAD1P28347 426 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 TNNT3P45378 269 aaPredicted RBP13.82□□□□□ -0.2
UPF1-205ENST00000598209 GPR1P46091 355 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 BLKP51451 505 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 HK3P52790 923 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 SRP54P61011 504 aaKnown RBP13.82□□□□□ -0.2
UPF1-205ENST00000598209 MPP3Q13368 585 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 C1orf61Q13536 156 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 HS1BP3Q53T59 392 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 PRRT3Q5FWE3 981 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 NYAP1Q6ZVC0 841 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 LYSMD3Q7Z3D4 306 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 RD3Q7Z3Z2 195 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 HEATR4Q86WZ0 1026 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 SLC13A5Q86YT5 568 aaPredicted RBP13.82□□□□□ -0.2
UPF1-205ENST00000598209 RAVER1Q8IY67 606 aaKnown RBP13.82□□□□□ -0.2
UPF1-205ENST00000598209 NRSN1Q8IZ57 195 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 PNPLA1Q8N8W4 532 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 IPMKQ8NFU5 416 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 SLC35B2Q8TB61 432 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 CCDC110Q8TBZ0 833 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 CCHCR1Q8TD31 782 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 SCAMP4Q969E2 229 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 AP2M1Q96CW1 435 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 MRGPRX2Q96LB1 330 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 TBATAQ96M53 351 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 SPATA13Q96N96 652 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 GORASP1Q9BQQ3 440 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 LRRC61Q9BV99 259 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 TEX101Q9BY14 249 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 CARD9Q9H257 536 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 KCNF1Q9H3M0 494 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 ZFYVE1Q9HBF4 777 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 MAGEE1Q9HCI5 957 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 PHPT1Q9NRX4 125 aaPredicted RBP13.82□□□□□ -0.2
UPF1-205ENST00000598209 NLGN3Q9NZ94 848 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 PKD2L2Q9NZM6 624 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 SHOC2Q9UQ13 582 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 ZNF711Q9Y462 761 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 CSNK1G3Q9Y6M4 447 aa13.82□□□□□ -0.2
UPF1-205ENST00000598209 ZFC3H1O60293 1989 aaKnown RBP13.82□□□□□ -0.2
UPF1-205ENST00000598209 PDE2AO00408 941 aaPredicted RBP13.81□□□□□ -0.2
UPF1-205ENST00000598209 GCATO75600 419 aa13.81□□□□□ -0.2
UPF1-205ENST00000598209 ANXA9O76027 345 aa13.81□□□□□ -0.2
UPF1-205ENST00000598209 TRIM16O95361 564 aa13.81□□□□□ -0.2
UPF1-205ENST00000598209 TOP3BO95985 862 aaKnown RBP13.81□□□□□ -0.2
UPF1-205ENST00000598209 SOD1P00441 154 aa13.81□□□□□ -0.2
UPF1-205ENST00000598209 TNFP01375 233 aa13.81□□□□□ -0.2
UPF1-205ENST00000598209 EPOP01588 193 aa13.81□□□□□ -0.2
UPF1-205ENST00000598209 SLC4A1P02730 911 aa13.81□□□□□ -0.2
UPF1-205ENST00000598209 PSMB4P28070 264 aa13.81□□□□□ -0.2
UPF1-205ENST00000598209 SPINT3P49223 89 aa13.81□□□□□ -0.2
UPF1-205ENST00000598209 GEMP55040 296 aa13.81□□□□□ -0.2
UPF1-205ENST00000598209 CDK3Q00526 305 aa13.81□□□□□ -0.2
UPF1-205ENST00000598209 DNAJC3Q13217 504 aa13.81□□□□□ -0.2
UPF1-205ENST00000598209 PROX2Q3B8N5 592 aa13.81□□□□□ -0.2
UPF1-205ENST00000598209 CCDC157Q569K6 752 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms