RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 DGKAP23743 735 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 STIP1P31948 543 aaKnown RBP11.88□□□□□ -0.51
LIG3-213ENST00000590630 BLKP51451 505 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 KIAA1024LP59773 190 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 CCDC173Q0VFZ6 552 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 BNIP3Q12983 259 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 EIF2B5Q13144 721 aaKnown RBP11.88□□□□□ -0.51
LIG3-213ENST00000590630 PRPSAP1Q14558 356 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 TRIP6Q15654 476 aaKnown RBP11.88□□□□□ -0.51
LIG3-213ENST00000590630 CDKN3Q16667 212 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 TPRG1LQ5T0D9 272 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 ARHGEF18Q6ZSZ5 1173 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 KANSL1Q7Z3B3 1105 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 GLRX5Q86SX6 157 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 NLRP8Q86W28 1048 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 FAM71DQ8N9W8 422 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 IPMKQ8NFU5 416 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 CCDC110Q8TBZ0 833 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 BTN2A2Q8WVV5 523 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 MAIP1Q8WWC4 291 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 ATG4AQ8WYN0 398 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 FUBP1Q96AE4 644 aaKnown RBP11.88□□□□□ -0.51
LIG3-213ENST00000590630 AP2M1Q96CW1 435 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 RTP4Q96DX8 246 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 MRGPRX2Q96LB1 330 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 TBATAQ96M53 351 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 CAMK1GQ96NX5 476 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 TMEM121Q9BTD3 319 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 CDH19Q9H159 772 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 ZFYVE1Q9HBF4 777 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 PKD2L2Q9NZM6 624 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 BTBD3Q9Y2F9 522 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 CEP295Q9C0D2 2601 aa11.88□□□□□ -0.51
LIG3-213ENST00000590630 GOLGA6CA6NDK9 693 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 GOLGA6BA6NDN3 693 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 F5H423 210 aaPredicted RBP11.87□□□□□ -0.51
LIG3-213ENST00000590630 K7ESM1 405 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 ENC1O14682 589 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 SDC3O75056 442 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 FGGP02679 453 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 FGF1P05230 155 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 ATXN1LP0C7T5 689 aaKnown RBP11.87□□□□□ -0.51
LIG3-213ENST00000590630 GOLGA6DP0CG33 693 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 MYCLP1P12525 358 aaPredicted RBP11.87□□□□□ -0.51
LIG3-213ENST00000590630 JUNDP17535 347 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 PSMB4P28070 264 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 SPINT3P49223 89 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 SIM1P81133 766 aaPredicted RBP11.87□□□□□ -0.51
LIG3-213ENST00000590630 FOXK2Q01167 660 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 PPARDQ03181 441 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 OASLQ15646 514 aaKnown RBP11.87□□□□□ -0.51
LIG3-213ENST00000590630 SLC1A5Q15758 541 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 P3H1Q32P28 736 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 ZNF542PQ5EBM4 170 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 SIRPB2Q5JXA9 342 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 ZNF569Q5MCW4 686 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 RAET1GQ6H3X3 334 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 LYSMD3Q7Z3D4 306 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 HEATR4Q86WZ0 1026 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 PHACTR4Q8IZ21 702 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 SLC25A45Q8N413 288 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 ZNF548Q8NEK5 533 aaPredicted RBP11.87□□□□□ -0.51
LIG3-213ENST00000590630 LRRC45Q96CN5 670 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 WDR92Q96MX6 357 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 GORASP1Q9BQQ3 440 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 TEX101Q9BY14 249 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 SLC13A1Q9BZW2 595 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 ABCG8Q9H221 673 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 TRABDQ9H4I3 376 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 PHPT1Q9NRX4 125 aaPredicted RBP11.87□□□□□ -0.51
LIG3-213ENST00000590630 RAD18Q9NS91 495 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 TRMT1Q9NXH9 659 aaKnown RBP11.87□□□□□ -0.51
LIG3-213ENST00000590630 GOLGA6AQ9NYA3 693 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 HACD3Q9P035 362 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 KLQ9UEF7 1012 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 FTSJ1Q9UET6 329 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 APOBEC3BQ9UH17 382 aaKnown RBP11.87□□□□□ -0.51
LIG3-213ENST00000590630 KLF15Q9UIH9 416 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 ZNF711Q9Y462 761 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 CSNK1G3Q9Y6M4 447 aa11.87□□□□□ -0.51
LIG3-213ENST00000590630 ZNF106Q9H2Y7 1883 aaKnown RBP11.87□□□□□ -0.51
LIG3-213ENST00000590630 ZFC3H1O60293 1989 aaKnown RBP11.87□□□□□ -0.51
LIG3-213ENST00000590630 TNFRSF10CO14798 259 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 SCAMP1O15126 338 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 TNFSF14O43557 240 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 CEP104O60308 925 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 RASGRP1O95267 797 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 SOD1P00441 154 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 PIRTP0C851 137 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 ALPPL2P10696 532 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 CXCR5P32302 372 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 HMGCLP35914 325 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 GPR1P46091 355 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 HK3P52790 923 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 GDF10P55107 478 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 DCDC1P59894 354 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 SRP54P61011 504 aaKnown RBP11.86□□□□□ -0.51
LIG3-213ENST00000590630 CDK3Q00526 305 aa11.86□□□□□ -0.51
LIG3-213ENST00000590630 SIX1Q15475 284 aaPredicted RBP11.86□□□□□ -0.51
LIG3-213ENST00000590630 CCNG2Q16589 344 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms