RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 HNRNPCL4P0DMR1 293 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 DDIT3P35638 169 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 NLRP5P59047 1200 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 POU5F1BQ06416 359 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 OLIG2Q13516 323 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 ZNF718Q3SXZ3 478 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 ZNF672Q499Z4 452 aaPredicted RBP6.31□□□□□ -1.4
SS18-214ENST00000580003 HIST2H2BCQ6DN03 193 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 HIST2H2BDQ6DRA6 164 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 SIGIRRQ6IA17 410 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 FOXRED2Q8IWF2 684 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 DIS3L2Q8IYB7 885 aaKnown RBP6.31□□□□□ -1.4
SS18-214ENST00000580003 SECTM1Q8WVN6 248 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 RFFLQ8WZ73 363 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 FIG4Q92562 907 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 HARBI1Q96MB7 349 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 UNC45AQ9H3U1 944 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 PCDH9Q9HC56 1237 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 C1RLQ9NZP8 487 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 PCDHAC2Q9Y5I4 1007 aa6.31□□□□□ -1.4
SS18-214ENST00000580003 NPIPB15A6NHN6 443 aaPredicted RBP6.3□□□□□ -1.4
SS18-214ENST00000580003 RTN3O95197 1032 aaPredicted RBP6.3□□□□□ -1.4
SS18-214ENST00000580003 ZNF182P17025 639 aaPredicted RBP6.3□□□□□ -1.4
SS18-214ENST00000580003 BDKRB2P30411 391 aa6.3□□□□□ -1.4
SS18-214ENST00000580003 CCR9P51686 369 aa6.3□□□□□ -1.4
SS18-214ENST00000580003 HNRNPH2P55795 449 aaKnown RBP6.3□□□□□ -1.4
SS18-214ENST00000580003 DCTN2Q13561 401 aaKnown RBP6.3□□□□□ -1.4
SS18-214ENST00000580003 DPCR1Q3MIW9 517 aa6.3□□□□□ -1.4
SS18-214ENST00000580003 PQLC2Q6ZP29 291 aa6.3□□□□□ -1.4
SS18-214ENST00000580003 TUBA1AQ71U36 451 aa6.3□□□□□ -1.4
SS18-214ENST00000580003 CCDC13Q8IYE1 715 aa6.3□□□□□ -1.4
SS18-214ENST00000580003 POC1AQ8NBT0 407 aa6.3□□□□□ -1.4
SS18-214ENST00000580003 ETNPPLQ8TBG4 499 aa6.3□□□□□ -1.4
SS18-214ENST00000580003 FAM149B1Q96BN6 582 aa6.3□□□□□ -1.4
SS18-214ENST00000580003 TMEM68Q96MH6 324 aa6.3□□□□□ -1.4
SS18-214ENST00000580003 TUBA1CQ9BQE3 449 aa6.3□□□□□ -1.4
SS18-214ENST00000580003 KCNN2Q9H2S1 579 aa6.3□□□□□ -1.4
SS18-214ENST00000580003 DLGAP2Q9P1A6 1054 aa6.3□□□□□ -1.4
SS18-214ENST00000580003 KCNG2Q9UJ96 466 aa6.3□□□□□ -1.4
SS18-214ENST00000580003 KRT36O76013 467 aa6.29□□□□□ -1.4
SS18-214ENST00000580003 FTCDO95954 541 aa6.29□□□□□ -1.4
SS18-214ENST00000580003 OLR1P78380 273 aa6.29□□□□□ -1.4
SS18-214ENST00000580003 TMEM115Q12893 351 aaPredicted RBP6.29□□□□□ -1.4
SS18-214ENST00000580003 FRG1Q14331 258 aaKnown RBP6.29□□□□□ -1.4
SS18-214ENST00000580003 CHERPQ8IWX8 916 aaKnown RBP6.29□□□□□ -1.4
SS18-214ENST00000580003 NAGSQ8N159 534 aa6.29□□□□□ -1.4
SS18-214ENST00000580003 RFLNBQ8N5W9 214 aa6.29□□□□□ -1.4
SS18-214ENST00000580003 SORCS1Q8WY21 1168 aa6.29□□□□□ -1.4
SS18-214ENST00000580003 INTS12Q96CB8 462 aaKnown RBP6.29□□□□□ -1.4
SS18-214ENST00000580003 UBTD1Q9HAC8 227 aa6.29□□□□□ -1.4
SS18-214ENST00000580003 MMP25Q9NPA2 562 aa6.29□□□□□ -1.4
SS18-214ENST00000580003 KCNS2Q9ULS6 477 aa6.29□□□□□ -1.4
SS18-214ENST00000580003 FAM237AA0A1B0GTK4 181 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 A0A1W2PRG0 241 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 PRAC2D3DTV9 90 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 TULP2O00295 520 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 VCYO14598 125 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 F7P08709 466 aaPredicted RBP6.28□□□□□ -1.4
SS18-214ENST00000580003 HSPA1AP0DMV8 641 aaKnown RBP6.28□□□□□ -1.4
SS18-214ENST00000580003 HSPA1BP0DMV9 641 aaKnown RBP6.28□□□□□ -1.4
SS18-214ENST00000580003 IL7RP16871 459 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 TMPOP42166 694 aaKnown RBP6.28□□□□□ -1.4
SS18-214ENST00000580003 GOLGA8DPQ0D2H9 430 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 ZBTB17Q13105 803 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 CPLX4Q7Z7G2 160 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 PAF1Q8N7H5 531 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 ZNF441Q8N8Z8 693 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 SPATA20Q8TB22 786 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 PCGF1Q9BSM1 259 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 C1QTNF5Q9BXJ0 243 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 EVA1AQ9H8M9 152 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 EBF2Q9HAK2 575 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 AMDHD2Q9Y303 409 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 LOXL2Q9Y4K0 774 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 PSAT1Q9Y617 370 aa6.28□□□□□ -1.4
SS18-214ENST00000580003 J3KRW8 73 aa6.27□□□□□ -1.41
SS18-214ENST00000580003 ZNF432O94892 652 aa6.27□□□□□ -1.41
SS18-214ENST00000580003 DGKAP23743 735 aa6.27□□□□□ -1.41
SS18-214ENST00000580003 ICAM3P32942 547 aa6.27□□□□□ -1.41
SS18-214ENST00000580003 IL15P40933 162 aaPredicted RBP6.27□□□□□ -1.41
SS18-214ENST00000580003 BRWD1-AS2P59051 145 aa6.27□□□□□ -1.41
SS18-214ENST00000580003 CSNK2A1P68400 391 aaPredicted RBP6.27□□□□□ -1.41
SS18-214ENST00000580003 FOXM1Q08050 763 aa6.27□□□□□ -1.41
SS18-214ENST00000580003 TSTQ16762 297 aaKnown RBP6.27□□□□□ -1.41
SS18-214ENST00000580003 KCNT1Q5JUK3 1230 aa6.27□□□□□ -1.41
SS18-214ENST00000580003 DUS1LQ6P1R4 473 aaKnown RBP6.27□□□□□ -1.41
SS18-214ENST00000580003 CACNA2D4Q7Z3S7 1137 aa6.27□□□□□ -1.41
SS18-214ENST00000580003 CSNK2A3Q8NEV1 391 aa6.27□□□□□ -1.41
SS18-214ENST00000580003 SPATA22Q8NHS9 363 aa6.27□□□□□ -1.41
SS18-214ENST00000580003 MAP7D2Q96T17 732 aa6.27□□□□□ -1.41
SS18-214ENST00000580003 PKP4Q99569 1192 aa6.27□□□□□ -1.41
SS18-214ENST00000580003 STRA6Q9BX79 667 aa6.27□□□□□ -1.41
SS18-214ENST00000580003 SLC28A3Q9HAS3 691 aa6.27□□□□□ -1.41
SS18-214ENST00000580003 TGFB1I1O43294 461 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 PAGE4O60829 102 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 NKX2-2O95096 273 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 EGFP01133 1207 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 MCM3P25205 808 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 BSGP35613 385 aa6.26□□□□□ -1.41
SS18-214ENST00000580003 GNL1P36915 607 aaPredicted RBP6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms