RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 MAFKO60675 156 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 ECEL1O95672 775 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 CYP2A6P11509 494 aaPredicted RBP21.04■□□□□ 0.96
VPS53-216ENST00000574029 AMPD1P23109 780 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 NFKBIAP25963 317 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 AK4P27144 223 aaPredicted RBP21.04■□□□□ 0.96
VPS53-216ENST00000574029 IL1R2P27930 398 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 ALDH4A1P30038 563 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 GNPDA1P46926 289 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 TRAF2Q12933 501 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 NFATC3Q12968 1075 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 ASIC2Q16515 512 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 AMZ1Q400G9 498 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 RALGPS1Q5JS13 557 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 CCDC183Q5T5S1 534 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 DENND2CQ68D51 928 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 POLNQ7Z5Q5 900 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 SCRN2Q96FV2 425 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 MCCC1Q96RQ3 725 aaPredicted RBP21.04■□□□□ 0.96
VPS53-216ENST00000574029 NUDT22Q9BRQ3 303 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 SUDS3Q9H7L9 328 aaPredicted RBP21.04■□□□□ 0.96
VPS53-216ENST00000574029 RTN4Q9NQC3 1192 aaKnown RBP21.04■□□□□ 0.96
VPS53-216ENST00000574029 ETNK2Q9NVF9 386 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 AKAP7Q9P0M2 348 aaPredicted RBP21.04■□□□□ 0.96
VPS53-216ENST00000574029 SLC17A4Q9Y2C5 497 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 ST14Q9Y5Y6 855 aa21.04■□□□□ 0.96
VPS53-216ENST00000574029 IGHV5-10-1A0A0J9YXX1 117 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 NPIPB15A6NHN6 443 aaPredicted RBP21.03■□□□□ 0.96
VPS53-216ENST00000574029 DDX3XO00571 662 aaKnown RBP eCLIP21.03■□□□□ 0.96
VPS53-216ENST00000574029 HGSO14964 777 aaPredicted RBP21.03■□□□□ 0.96
VPS53-216ENST00000574029 ZW10O43264 779 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 WISP1O95388 367 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 CCL4P13236 92 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 WT1P19544 449 aaPredicted RBP21.03■□□□□ 0.96
VPS53-216ENST00000574029 CD1CP29017 333 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 ARL4AP40617 200 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 PRKCIP41743 596 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 GPR3P46089 330 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 KCNC4Q03721 635 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 TMEM164Q5U3C3 297 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 E4F1Q66K89 784 aaPredicted RBP21.03■□□□□ 0.96
VPS53-216ENST00000574029 TMCO3Q6UWJ1 677 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 Q6ZVL8 140 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 NAGSQ8N159 534 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 BBS5Q8N3I7 341 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 AOPEPQ8N6M6 819 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 ZSCAN1Q8NBB4 408 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 ZNF653Q96CK0 615 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 ARHGAP9Q9BRR9 750 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 FAM117AQ9C073 453 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 MRPL47Q9HD33 250 aaKnown RBP21.03■□□□□ 0.96
VPS53-216ENST00000574029 STARD5Q9NSY2 213 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 PPIL1Q9Y3C6 166 aa21.03■□□□□ 0.96
VPS53-216ENST00000574029 AHCTF1Q8WYP5 2266 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 PGLSO95336 258 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 IVLP07476 585 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 TCF4P15884 667 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 ITGB6P18564 788 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 POLD2P49005 469 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 CTBSQ01459 385 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 DPTQ07507 201 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 PEX6Q13608 980 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 PTPRRQ15256 657 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 SMTNL2Q2TAL5 461 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 BOLA3Q53S33 107 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 SLC30A9Q6PML9 568 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 PRICKLE2Q7Z3G6 844 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 TECPR1Q7Z6L1 1165 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 TSPAN33Q86UF1 283 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 PATE1Q8WXA2 126 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 TRIM11Q96F44 468 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 SCARF2Q96GP6 870 aaPredicted RBP21.02■□□□□ 0.96
VPS53-216ENST00000574029 CSPG4P5Q96PW8 444 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 SEMA3CQ99985 751 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 MYO1AQ9UBC5 1043 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 MAST4O15021 2626 aa21.02■□□□□ 0.96
VPS53-216ENST00000574029 MYBL1P10243 752 aa21.01■□□□□ 0.95
VPS53-216ENST00000574029 ADCY8P40145 1251 aa21.01■□□□□ 0.95
VPS53-216ENST00000574029 MMP13P45452 471 aa21.01■□□□□ 0.95
VPS53-216ENST00000574029 CDH6P55285 790 aa21.01■□□□□ 0.95
VPS53-216ENST00000574029 MAXP61244 160 aa21.01■□□□□ 0.95
VPS53-216ENST00000574029 SQSTM1Q13501 440 aa21.01■□□□□ 0.95
VPS53-216ENST00000574029 TRA2AQ13595 282 aaKnown RBP eCLIP21.01■□□□□ 0.95
VPS53-216ENST00000574029 TBR1Q16650 682 aa21.01■□□□□ 0.95
VPS53-216ENST00000574029 ARMC12Q5T9G4 340 aa21.01■□□□□ 0.95
VPS53-216ENST00000574029 RAET1GQ6H3X3 334 aa21.01■□□□□ 0.95
VPS53-216ENST00000574029 RCBTB1Q8NDN9 531 aa21.01■□□□□ 0.95
VPS53-216ENST00000574029 HSPH1Q92598 858 aa21.01■□□□□ 0.95
VPS53-216ENST00000574029 CCDC74BQ96LY2 380 aa21.01■□□□□ 0.95
VPS53-216ENST00000574029 ISCUQ9H1K1 167 aa21.01■□□□□ 0.95
VPS53-216ENST00000574029 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.01■□□□□ 0.95
VPS53-216ENST00000574029 TMEM63CQ9P1W3 806 aa21.01■□□□□ 0.95
VPS53-216ENST00000574029 PCDHGA3Q9Y5H0 932 aa21.01■□□□□ 0.95
VPS53-216ENST00000574029 HEMK1Q9Y5R4 338 aaPredicted RBP21.01■□□□□ 0.95
VPS53-216ENST00000574029 PIEZO2Q9H5I5 2752 aa21.01■□□□□ 0.95
VPS53-216ENST00000574029 SDK2Q58EX2 2172 aa21■□□□□ 0.95
VPS53-216ENST00000574029 GOLGA6CA6NDK9 693 aa21■□□□□ 0.95
VPS53-216ENST00000574029 GOLGA6BA6NDN3 693 aa21■□□□□ 0.95
VPS53-216ENST00000574029 STMND1H3BQB6 276 aa21■□□□□ 0.95
VPS53-216ENST00000574029 PPM1DO15297 605 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms