RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 GPR1P46091 355 aa20.7■□□□□ 0.9
CLN3-219ENST00000565778 PPIDQ08752 370 aaKnown RBP20.7■□□□□ 0.9
CLN3-219ENST00000565778 LRRC66Q68CR7 880 aa20.7■□□□□ 0.9
CLN3-219ENST00000565778 RFLNAQ6ZTI6 216 aa20.7■□□□□ 0.9
CLN3-219ENST00000565778 VSIG1Q86XK7 387 aa20.7■□□□□ 0.9
CLN3-219ENST00000565778 TC2NQ8N9U0 490 aa20.7■□□□□ 0.9
CLN3-219ENST00000565778 LPCAT1Q8NF37 534 aa20.7■□□□□ 0.9
CLN3-219ENST00000565778 WDR48Q8TAF3 677 aa20.7■□□□□ 0.9
CLN3-219ENST00000565778 AP2M1Q96CW1 435 aa20.7■□□□□ 0.9
CLN3-219ENST00000565778 TDRD1Q9BXT4 1180 aaKnown RBP20.7■□□□□ 0.9
CLN3-219ENST00000565778 ABCG8Q9H221 673 aa20.7■□□□□ 0.9
CLN3-219ENST00000565778 CARS2Q9HA77 564 aaKnown RBP20.7■□□□□ 0.9
CLN3-219ENST00000565778 URB1O60287 2271 aaKnown RBP20.7■□□□□ 0.9
CLN3-219ENST00000565778 TCEA3O75764 348 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 PRLP01236 227 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 CEACAM5P06731 702 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 ZNF30P17039 623 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 CD86P42081 329 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 DYNLT1P63172 113 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 GABREP78334 506 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 CDK3Q00526 305 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 DPTQ07507 201 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 SPIDRQ14159 915 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 PDK1Q15118 436 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 TCEAL1Q15170 157 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 SLC9A4Q6AI14 798 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 NPNTQ6UXI9 565 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 LSMEM2Q8N112 164 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 OR6C4Q8NGE1 309 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 CCL4L1Q8NHW4 92 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 CCDC74AQ96AQ1 378 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 GRAMD1AQ96CP6 724 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 POLR1BQ9H9Y6 1135 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 DNPEPQ9ULA0 475 aa20.69■□□□□ 0.9
CLN3-219ENST00000565778 ANKRD11Q6UB99 2663 aaPredicted RBP20.68■□□□□ 0.9
CLN3-219ENST00000565778 CHD6Q8TD26 2715 aa20.68■□□□□ 0.9
CLN3-219ENST00000565778 CASC3O15234 703 aaKnown RBP20.68■□□□□ 0.9
CLN3-219ENST00000565778 CLDN7O95471 211 aa20.68■□□□□ 0.9
CLN3-219ENST00000565778 LSSP48449 732 aa20.68■□□□□ 0.9
CLN3-219ENST00000565778 RPL26P61254 145 aaKnown RBP20.68■□□□□ 0.9
CLN3-219ENST00000565778 TBC1D25Q3MII6 688 aa20.68■□□□□ 0.9
CLN3-219ENST00000565778 OGFOD3Q6PK18 319 aa20.68■□□□□ 0.9
CLN3-219ENST00000565778 CNTD1Q8N815 330 aa20.68■□□□□ 0.9
CLN3-219ENST00000565778 GPR156Q8NFN8 814 aa20.68■□□□□ 0.9
CLN3-219ENST00000565778 SCAMP4Q969E2 229 aa20.68■□□□□ 0.9
CLN3-219ENST00000565778 ATXN7L3BQ96GX2 97 aa20.68■□□□□ 0.9
CLN3-219ENST00000565778 SEPT10Q9P0V9 454 aa20.68■□□□□ 0.9
CLN3-219ENST00000565778 RABGEF1Q9UJ41 708 aa20.68■□□□□ 0.9
CLN3-219ENST00000565778 RPL26L1Q9UNX3 145 aaKnown RBP20.68■□□□□ 0.9
CLN3-219ENST00000565778 ENTPD2Q9Y5L3 495 aa20.68■□□□□ 0.9
CLN3-219ENST00000565778 ALG6Q9Y672 507 aa20.68■□□□□ 0.9
CLN3-219ENST00000565778 DSPP15924 2871 aaKnown RBP20.68■□□□□ 0.9
CLN3-219ENST00000565778 PKD1L2Q7Z442 2459 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 CAPN8A6NHC0 703 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 B4DGG1 531 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 PPP1R12AO14974 1030 aaPredicted RBP20.67■□□□□ 0.9
CLN3-219ENST00000565778 FUCA1P04066 466 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 ITPKBP27987 946 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 TEAD1P28347 426 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 ABCG1P45844 678 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 GNPDA1P46926 289 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 POLD2P49005 469 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 CCL7P80098 99 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 IFI35P80217 286 aaPredicted RBP20.67■□□□□ 0.9
CLN3-219ENST00000565778 ZBTB17Q13105 803 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 SPA17Q15506 151 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 C3orf38Q5JPI3 329 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 FAM182AQ5T1J6 154 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 DOK6Q6PKX4 331 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 MFSD7Q6UXD7 560 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 B4GALNT4Q76KP1 1039 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 PDZD3Q86UT5 571 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 NLRP8Q86W28 1048 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 Q8N9G6 341 aaPredicted RBP20.67■□□□□ 0.9
CLN3-219ENST00000565778 SNIP1Q8TAD8 396 aaKnown RBP20.67■□□□□ 0.9
CLN3-219ENST00000565778 ZNF578Q96N58 590 aaPredicted RBP20.67■□□□□ 0.9
CLN3-219ENST00000565778 AGAP3Q96P47 875 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 MLPHQ9BV36 600 aaPredicted RBP20.67■□□□□ 0.9
CLN3-219ENST00000565778 ADGRE3Q9BY15 652 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 CEP41Q9BYV8 373 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 FRMD8Q9BZ67 464 aaPredicted RBP20.67■□□□□ 0.9
CLN3-219ENST00000565778 SUFUQ9UMX1 484 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 SATB2Q9UPW6 733 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 PCDHA13Q9Y5I0 950 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 ACACAQ13085 2346 aa20.67■□□□□ 0.9
CLN3-219ENST00000565778 APC2O95996 2303 aa20.66■□□□□ 0.9
CLN3-219ENST00000565778 ANKRD66B4E2M5 251 aa20.66■□□□□ 0.9
CLN3-219ENST00000565778 MMP2P08253 660 aa20.66■□□□□ 0.9
CLN3-219ENST00000565778 GLB1P16278 677 aa20.66■□□□□ 0.9
CLN3-219ENST00000565778 STC1P52823 247 aa20.66■□□□□ 0.9
CLN3-219ENST00000565778 SKOR1P84550 965 aa20.66■□□□□ 0.9
CLN3-219ENST00000565778 ILF3Q12906 894 aaKnown RBP eCLIP20.66■□□□□ 0.9
CLN3-219ENST00000565778 FOXR1Q6PIV2 292 aa20.66■□□□□ 0.9
CLN3-219ENST00000565778 KDELC2Q7Z4H8 507 aa20.66■□□□□ 0.9
CLN3-219ENST00000565778 CCDC170Q8IYT3 715 aa20.66■□□□□ 0.9
CLN3-219ENST00000565778 NRSN1Q8IZ57 195 aa20.66■□□□□ 0.9
CLN3-219ENST00000565778 KIAA1524Q8TCG1 905 aa20.66■□□□□ 0.9
CLN3-219ENST00000565778 GPBAR1Q8TDU6 330 aa20.66■□□□□ 0.9
CLN3-219ENST00000565778 GFM1Q96RP9 751 aaKnown RBP20.66■□□□□ 0.9
CLN3-219ENST00000565778 GSDMCQ9BYG8 508 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms