RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 IFI35P80217 286 aaPredicted RBP14.85□□□□□ -0.03
CLN3-213ENST00000565047 SKOR1P84550 965 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 CDK3Q00526 305 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 TCEA2Q15560 299 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 LRRC66Q68CR7 880 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 USP45Q70EL2 814 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 PDZD3Q86UT5 571 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 HEATR4Q86WZ0 1026 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 RAVER1Q8IY67 606 aaKnown RBP14.85□□□□□ -0.03
CLN3-213ENST00000565047 CCDC13Q8IYE1 715 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 TADA1Q96BN2 335 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 GRAMD1AQ96CP6 724 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 CRELD1Q96HD1 420 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 WDR24Q96S15 920 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 ABCG8Q9H221 673 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 ASCL3Q9NQ33 180 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 GPR34Q9UPC5 381 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 CHKBQ9Y259 395 aa14.85□□□□□ -0.03
CLN3-213ENST00000565047 CAPN8A6NHC0 703 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 KCNK1O00180 336 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 JCHAINP01591 159 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 MPOP05164 745 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 TPM1P09493 284 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 HOXB3P14651 431 aaPredicted RBP14.84□□□□□ -0.03
CLN3-213ENST00000565047 SLC1A1P43005 524 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 RPL26P61254 145 aaKnown RBP14.84□□□□□ -0.03
CLN3-213ENST00000565047 TSR1Q2NL82 804 aaKnown RBP14.84□□□□□ -0.03
CLN3-213ENST00000565047 DENND2CQ68D51 928 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 NPNTQ6UXI9 565 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 ADAMTSL4Q6UY14 1074 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 ZNF765Q7L2R6 523 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 SCG3Q8WXD2 468 aaKnown RBP14.84□□□□□ -0.03
CLN3-213ENST00000565047 SCAMP4Q969E2 229 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 CCDC74AQ96AQ1 378 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 EID2BQ96D98 161 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 ATXN7L3BQ96GX2 97 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 TRIB3Q96RU7 358 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 AGAP2Q99490 1192 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 POLR1BQ9H9Y6 1135 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 CYP4F12Q9HCS2 524 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 SIRPGQ9P1W8 387 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 GULP1Q9UBP9 304 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 APPL1Q9UKG1 709 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 RPL26L1Q9UNX3 145 aaKnown RBP14.84□□□□□ -0.03
CLN3-213ENST00000565047 SSUH2Q9Y2M2 353 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 HYOU1Q9Y4L1 999 aa14.84□□□□□ -0.03
CLN3-213ENST00000565047 LRRD1A4D1F6 860 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 PMS2P1A4D2B8 440 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 PDE2AO00408 941 aaPredicted RBP14.83□□□□□ -0.04
CLN3-213ENST00000565047 PNLIPP16233 465 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 ZNF30P17039 623 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 COMTP21964 271 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 NFKBIAP25963 317 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 POLD2P49005 469 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 ITKQ08881 620 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 ARHGEF7Q14155 803 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 HLTFQ14527 1009 aaKnown RBP eCLIP14.83□□□□□ -0.04
CLN3-213ENST00000565047 QPCTQ16769 361 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 CERCAMQ5T4B2 595 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 MFSD7Q6UXD7 560 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 RBM44Q6ZP01 1051 aaKnown RBP14.83□□□□□ -0.04
CLN3-213ENST00000565047 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.83□□□□□ -0.04
CLN3-213ENST00000565047 PAF1Q8N7H5 531 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 CCNYQ8ND76 341 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 WDR48Q8TAF3 677 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 COX14Q96I36 57 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 ZNF578Q96N58 590 aaPredicted RBP14.83□□□□□ -0.04
CLN3-213ENST00000565047 PCDH9Q9HC56 1237 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 PHPT1Q9NRX4 125 aaPredicted RBP14.83□□□□□ -0.04
CLN3-213ENST00000565047 SPATS2LQ9NUQ6 558 aaKnown RBP14.83□□□□□ -0.04
CLN3-213ENST00000565047 TRNAU1APQ9NX07 287 aaKnown RBP14.83□□□□□ -0.04
CLN3-213ENST00000565047 CNOT6Q9ULM6 557 aaKnown RBP14.83□□□□□ -0.04
CLN3-213ENST00000565047 PCDHGA8Q9Y5G5 932 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 ALG6Q9Y672 507 aa14.83□□□□□ -0.04
CLN3-213ENST00000565047 APOL1O14791 398 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 CLDN7O95471 211 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 FGF1P05230 155 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 IVLP07476 585 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 GLB1P16278 677 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 FECHP22830 423 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 ACTN2P35609 894 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 CDKN2BP42772 138 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 ERVPABLB-1P60509 514 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 GABREP78334 506 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 CCL7P80098 99 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 ADCY2Q08462 1091 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 TAF8Q7Z7C8 310 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 B3GNT8Q7Z7M8 397 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 RHOT1Q8IXI2 618 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 NRSN1Q8IZ57 195 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 OR6C4Q8NGE1 309 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 RNF25Q96BH1 459 aaPredicted RBP14.82□□□□□ -0.04
CLN3-213ENST00000565047 IMP4Q96G21 291 aaKnown RBP14.82□□□□□ -0.04
CLN3-213ENST00000565047 SLC46A1Q96NT5 459 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 PRORYQ9H606 182 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 CD84Q9UIB8 345 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 SUFUQ9UMX1 484 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 TFR2Q9UP52 801 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 DOLKQ9UPQ8 538 aa14.82□□□□□ -0.04
CLN3-213ENST00000565047 SATB2Q9UPW6 733 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms