RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SLC6A2P23975 617 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 SERPINH1P50454 418 aaKnown RBP13.2□□□□□ -0.3
CLN3-210ENST00000563874 DIO3P55073 304 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 CACNB2Q08289 660 aaPredicted RBP13.2□□□□□ -0.3
CLN3-210ENST00000563874 INPP5AQ14642 412 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 ZBED5Q49AG3 693 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 KIAA0408Q6ZU52 694 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 CLYBLQ8N0X4 340 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 CASP10Q92851 521 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 ROPN1LQ96C74 230 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 TSPAN17Q96FV3 270 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 MAML3Q96JK9 1138 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 PRKD2Q9BZL6 878 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 RGS18Q9NS28 235 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 USP22Q9UPT9 525 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 NDUFAF1Q9Y375 327 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 ZNF711Q9Y462 761 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 TRIP12Q14669 1992 aaPredicted RBP13.2□□□□□ -0.3
CLN3-210ENST00000563874 PDCD11Q14690 1871 aaKnown RBP13.2□□□□□ -0.3
CLN3-210ENST00000563874 MBLAC1A4D2B0 266 aaPredicted RBP13.2□□□□□ -0.3
CLN3-210ENST00000563874 J3KR12 359 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 CLOCKO15516 846 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 SUPT3HO75486 399 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 CCR1P32246 355 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 NUP107P57740 925 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 CDC42EP1Q00587 391 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 DSC2Q02487 901 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 NEDD8Q15843 81 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 KCTD21Q4G0X4 260 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 TIGD5Q53EQ6 642 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 XKR5Q6UX68 686 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 HACD2Q6Y1H2 254 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 TMEM26Q6ZUK4 368 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 MIER2Q8N344 545 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 NLGN2Q8NFZ4 835 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 MAGEE2Q8TD90 523 aaPredicted RBP13.2□□□□□ -0.3
CLN3-210ENST00000563874 POLR1BQ9H9Y6 1135 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 MRM3Q9HC36 420 aaKnown RBP13.2□□□□□ -0.3
CLN3-210ENST00000563874 BLOC1S6Q9UL45 172 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 CLEC11AQ9Y240 323 aa13.2□□□□□ -0.3
CLN3-210ENST00000563874 IRAK2O43187 625 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 BAIAP3O94812 1187 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 PIRTP0C851 137 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 CD247P20963 164 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 MYF6P23409 242 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 HERVK_113P63132 956 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 SLC10A7Q0GE19 358 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 MFSD10Q14728 455 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 FGD3Q5JSP0 725 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 KDELC1Q6UW63 502 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 LYSMD3Q7Z3D4 306 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 ADGRG5Q8IZF4 528 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 BBS5Q8N3I7 341 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 CALML6Q8TD86 181 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 NPLQ9BXD5 320 aaPredicted RBP13.19□□□□□ -0.3
CLN3-210ENST00000563874 ERVK-6Q9BXR3 956 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 TUBB1Q9H4B7 451 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 CATSPERBQ9H7T0 1116 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 VPS45Q9NRW7 570 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 MRGBPQ9NV56 204 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 TBC1D13Q9NVG8 400 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 TIMM22Q9Y584 194 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 S1PR4O95977 384 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 F2P00734 622 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 HOXD8P13378 290 aaPredicted RBP13.19□□□□□ -0.3
CLN3-210ENST00000563874 SCNN1GP51170 649 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 ZNF135P52742 658 aaPredicted RBP13.19□□□□□ -0.3
CLN3-210ENST00000563874 ATP6V0D1P61421 351 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 ZNF33AQ06730 810 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 SLC36A3Q495N2 470 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 SCIMPQ6UWF3 145 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 MFSD2AQ8NA29 543 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 LZICQ8WZA0 190 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 LRRC58Q96CX6 371 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 THAP11Q96EK4 314 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 TEX37Q96LM6 180 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 TBATAQ96M53 351 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 SEPHS2Q99611 448 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 RTP3Q9BQQ7 232 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 TINF2Q9BSI4 451 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 PAIP1Q9H074 479 aaKnown RBP13.19□□□□□ -0.3
CLN3-210ENST00000563874 PLGRKTQ9HBL7 147 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 POLR3BQ9NW08 1133 aaPredicted RBP13.19□□□□□ -0.3
CLN3-210ENST00000563874 SLAMF8Q9P0V8 285 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 CDH9Q9ULB4 789 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 FADS3Q9Y5Q0 445 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 PTCH2Q9Y6C5 1203 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 BOLA2-SMG1P6H3BVE0 249 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 ZSCAN9O15535 394 aaPredicted RBP13.19□□□□□ -0.3
CLN3-210ENST00000563874 B4GAT1O43505 415 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 VARSP26640 1264 aaKnown RBP13.19□□□□□ -0.3
CLN3-210ENST00000563874 BRCC3P46736 316 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 CCT8P50990 548 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 PSMD7P51665 324 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 NAA20P61599 178 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 BEX3Q00994 111 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 GALNT1Q10472 559 aaPredicted RBP13.19□□□□□ -0.3
CLN3-210ENST00000563874 RAB39AQ14964 217 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 OR4D1Q15615 310 aa13.19□□□□□ -0.3
CLN3-210ENST00000563874 INTS11Q5TA45 600 aaKnown RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms