RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 NOC3LQ8WTT2 800 aaKnown RBP4.34□□□□□ -1.71
VPS13C-208ENST00000559119 ZNF354BQ96LW1 612 aa4.34□□□□□ -1.71
VPS13C-208ENST00000559119 EYA3Q99504 573 aa4.34□□□□□ -1.71
VPS13C-208ENST00000559119 MTERF1Q99551 399 aaKnown RBP4.34□□□□□ -1.71
VPS13C-208ENST00000559119 FSD1Q9BTV5 496 aa4.34□□□□□ -1.71
VPS13C-208ENST00000559119 UPF2Q9HAU5 1272 aaKnown RBP4.34□□□□□ -1.71
VPS13C-208ENST00000559119 MAGEE1Q9HCI5 957 aa4.34□□□□□ -1.71
VPS13C-208ENST00000559119 BPIFA1Q9NP55 256 aa4.34□□□□□ -1.71
VPS13C-208ENST00000559119 FBXO9Q9UK97 447 aaPredicted RBP4.34□□□□□ -1.71
VPS13C-208ENST00000559119 LOXL2Q9Y4K0 774 aa4.34□□□□□ -1.71
VPS13C-208ENST00000559119 TMEM202A6NGA9 273 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 CNPP09543 421 aaKnown RBP4.33□□□□□ -1.72
VPS13C-208ENST00000559119 BDKRB2P30411 391 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 CORO1AP31146 461 aaKnown RBP4.33□□□□□ -1.72
VPS13C-208ENST00000559119 CHKAP35790 457 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 MMP14P50281 582 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 ISL1P61371 349 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 CCDC96Q2M329 555 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 SLC45A4Q5BKX6 768 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 SGO1Q5FBB7 561 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 SFMBT2Q5VUG0 894 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 CPLX2Q6PUV4 134 aaKnown RBP4.33□□□□□ -1.72
VPS13C-208ENST00000559119 ASB18Q6ZVZ8 466 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 C2CD5Q86YS7 1000 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 MYCT1Q8N699 235 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 ST6GAL2Q96JF0 529 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 COG8Q96MW5 612 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 CMKLR1Q99788 373 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 SH3GL2Q99962 352 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 GPR108Q9NPR9 543 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 MAP3K20Q9NYL2 800 aaKnown RBP4.33□□□□□ -1.72
VPS13C-208ENST00000559119 TTC7AQ9ULT0 858 aaPredicted RBP4.33□□□□□ -1.72
VPS13C-208ENST00000559119 FAM96BQ9Y3D0 163 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 OR2W1Q9Y3N9 320 aa4.33□□□□□ -1.72
VPS13C-208ENST00000559119 hCG_1642624A0A1W2PR95 340 aa4.32□□□□□ -1.72
VPS13C-208ENST00000559119 TSPAN3O60637 253 aa4.32□□□□□ -1.72
VPS13C-208ENST00000559119 MT-CYBP00156 380 aaPredicted RBP4.32□□□□□ -1.72
VPS13C-208ENST00000559119 PATE4P0C8F1 98 aa4.32□□□□□ -1.72
VPS13C-208ENST00000559119 MAOAP21397 527 aa4.32□□□□□ -1.72
VPS13C-208ENST00000559119 METAP2P50579 478 aaKnown RBP eCLIP4.32□□□□□ -1.72
VPS13C-208ENST00000559119 BRD3Q15059 726 aa4.32□□□□□ -1.72
VPS13C-208ENST00000559119 ZNF667Q5HYK9 610 aa4.32□□□□□ -1.72
VPS13C-208ENST00000559119 METTL2BQ6P1Q9 378 aaKnown RBP4.32□□□□□ -1.72
VPS13C-208ENST00000559119 SLC35F3Q8IY50 421 aa4.32□□□□□ -1.72
VPS13C-208ENST00000559119 OR2AK2Q8NG84 335 aa4.32□□□□□ -1.72
VPS13C-208ENST00000559119 METTL2AQ96IZ6 378 aaKnown RBP4.32□□□□□ -1.72
VPS13C-208ENST00000559119 KCNN2Q9H2S1 579 aa4.32□□□□□ -1.72
VPS13C-208ENST00000559119 NDST4Q9H3R1 872 aa4.32□□□□□ -1.72
VPS13C-208ENST00000559119 DLGAP4Q9Y2H0 992 aa4.32□□□□□ -1.72
VPS13C-208ENST00000559119 SMIM1B2RUZ4 78 aa4.31□□□□□ -1.72
VPS13C-208ENST00000559119 CHRNB4P30926 498 aa4.31□□□□□ -1.72
VPS13C-208ENST00000559119 PAPOLAP51003 745 aaKnown RBP4.31□□□□□ -1.72
VPS13C-208ENST00000559119 GAGE5Q13069 117 aa4.31□□□□□ -1.72
VPS13C-208ENST00000559119 GAGE6Q13070 117 aa4.31□□□□□ -1.72
VPS13C-208ENST00000559119 KRT72Q14CN4 511 aa4.31□□□□□ -1.72
VPS13C-208ENST00000559119 PDCD2Q16342 344 aaPredicted RBP4.31□□□□□ -1.72
VPS13C-208ENST00000559119 HIST2H2ACQ16777 129 aaPredicted RBP4.31□□□□□ -1.72
VPS13C-208ENST00000559119 FBXO46Q6PJ61 603 aaPredicted RBP4.31□□□□□ -1.72
VPS13C-208ENST00000559119 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.31□□□□□ -1.72
VPS13C-208ENST00000559119 TMTC1Q8IUR5 882 aa4.31□□□□□ -1.72
VPS13C-208ENST00000559119 SPATA6LQ8N4H0 392 aa4.31□□□□□ -1.72
VPS13C-208ENST00000559119 ZBTB2Q8N680 514 aa4.31□□□□□ -1.72
VPS13C-208ENST00000559119 C11orf65Q8NCR3 313 aa4.31□□□□□ -1.72
VPS13C-208ENST00000559119 MAPK1IP1LQ8NDC0 245 aa4.31□□□□□ -1.72
VPS13C-208ENST00000559119 TNIP2Q8NFZ5 429 aa4.31□□□□□ -1.72
VPS13C-208ENST00000559119 RUFY2Q8WXA3 655 aa4.31□□□□□ -1.72
VPS13C-208ENST00000559119 TM9SF4Q92544 642 aa4.31□□□□□ -1.72
VPS13C-208ENST00000559119 STAMBPL1Q96FJ0 436 aa4.31□□□□□ -1.72
VPS13C-208ENST00000559119 ZNF599Q96NL3 588 aa4.31□□□□□ -1.72
VPS13C-208ENST00000559119 OGFRQ9NZT2 677 aa4.31□□□□□ -1.72
VPS13C-208ENST00000559119 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.31□□□□□ -1.72
VPS13C-208ENST00000559119 LSM4Q9Y4Z0 139 aaKnown RBP4.31□□□□□ -1.72
VPS13C-208ENST00000559119 CAVIN2O95810 425 aa4.3□□□□□ -1.72
VPS13C-208ENST00000559119 HEXAP06865 529 aa4.3□□□□□ -1.72
VPS13C-208ENST00000559119 NOVP48745 357 aa4.3□□□□□ -1.72
VPS13C-208ENST00000559119 EFNA5P52803 228 aa4.3□□□□□ -1.72
VPS13C-208ENST00000559119 ZNF234Q14588 700 aa4.3□□□□□ -1.72
VPS13C-208ENST00000559119 PPP2R5BQ15173 497 aa4.3□□□□□ -1.72
VPS13C-208ENST00000559119 TUBB8Q3ZCM7 444 aa4.3□□□□□ -1.72
VPS13C-208ENST00000559119 TTI2Q6NXR4 508 aa4.3□□□□□ -1.72
VPS13C-208ENST00000559119 ATF7IPQ6VMQ6 1270 aa4.3□□□□□ -1.72
VPS13C-208ENST00000559119 CCDC146Q8IYE0 955 aa4.3□□□□□ -1.72
VPS13C-208ENST00000559119 LSM14AQ8ND56 463 aaKnown RBP4.3□□□□□ -1.72
VPS13C-208ENST00000559119 HCAR2Q8TDS4 363 aa4.3□□□□□ -1.72
VPS13C-208ENST00000559119 PIGTQ969N2 578 aa4.3□□□□□ -1.72
VPS13C-208ENST00000559119 SCRN2Q96FV2 425 aa4.3□□□□□ -1.72
VPS13C-208ENST00000559119 NEURL2Q9BR09 285 aa4.3□□□□□ -1.72
VPS13C-208ENST00000559119 PPP1R3EQ9H7J1 279 aa4.3□□□□□ -1.72
VPS13C-208ENST00000559119 RIPOR2Q9Y4F9 1068 aa4.3□□□□□ -1.72
VPS13C-208ENST00000559119 IGLV5-45A0A087WSX0 123 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 IRAK2O43187 625 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 GALTP07902 379 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 NR1D1P20393 614 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 ZNF10P21506 573 aaPredicted RBP4.29□□□□□ -1.72
VPS13C-208ENST00000559119 SHMT1P34896 483 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 KRT2P35908 639 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 GPD2P43304 727 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 EFNB1P98172 346 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 TAF5Q15542 800 aa4.29□□□□□ -1.72
VPS13C-208ENST00000559119 C2orf68Q2NKX9 166 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms