RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 GPIP06744 558 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 KRT19P08727 400 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 M6PRP20645 277 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 DNAJB1P25685 340 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 RBL1P28749 1068 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 CD40LGP29965 261 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 SSTR3P32745 418 aaPredicted RBP10.89□□□□□ -0.67
USP3-206ENST00000558157 GRK3P35626 688 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 PLA2G16P53816 162 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 GABARAPL2P60520 117 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 YWHAEP62258 255 aaKnown RBP10.89□□□□□ -0.67
USP3-206ENST00000558157 ADARB1P78563 741 aaKnown RBP10.89□□□□□ -0.67
USP3-206ENST00000558157 BNIP2Q12982 314 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 KRR1Q13601 381 aaKnown RBP10.89□□□□□ -0.67
USP3-206ENST00000558157 SQLEQ14534 574 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 DSC3Q14574 896 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 DGUOKQ16854 277 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 NXNQ6DKJ4 435 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 LRRC8EQ6NSJ5 796 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 NPNTQ6UXI9 565 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 SLC39A5Q6ZMH5 540 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 LRRC8DQ7L1W4 858 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 LSMEM2Q8N112 164 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 PLD5Q8N7P1 536 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 BPIFB6Q8NFQ5 453 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 ATL1Q8WXF7 558 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 TRIM63Q969Q1 353 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 VPS33AQ96AX1 596 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 ROPN1LQ96C74 230 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 HDAC11Q96DB2 347 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 PGBD4Q96DM1 585 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 FBXL20Q96IG2 436 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 LHPPQ9H008 270 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 RNF38Q9H0F5 515 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 NMRAL1Q9HBL8 299 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 MRM3Q9HC36 420 aaKnown RBP10.89□□□□□ -0.67
USP3-206ENST00000558157 TBC1D13Q9NVG8 400 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 MTMR10Q9NXD2 777 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 NPAP1Q9NZP6 1156 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 TBC1D14Q9P2M4 693 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 VWA7Q9Y334 891 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 LOC105371267A0A1B0GV96 52 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 SAGE2PA6NJ88 616 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 MEIS3P2A8K0S8 358 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 ZNF487B1APH4 448 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 SRP72O76094 671 aaKnown RBP10.89□□□□□ -0.67
USP3-206ENST00000558157 TPPPO94811 219 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 KCNH1O95259 989 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 CRYZL1O95825 349 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 HADHAP40939 763 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 RPS9P46781 194 aaKnown RBP10.89□□□□□ -0.67
USP3-206ENST00000558157 CDH6P55285 790 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 DNASE1L3Q13609 305 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 ZNF699Q32M78 642 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 PPM1JQ5JR12 505 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 REP15Q6BDI9 236 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 PRMT9Q6P2P2 845 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 ALKAL1Q6UXT8 129 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 ZYG11AQ6WRX3 759 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 SLC22A16Q86VW1 577 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 PELI3Q8N2H9 469 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 WDTC1Q8N5D0 677 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 PCDH20Q8N6Y1 951 aaKnown RBP10.89□□□□□ -0.67
USP3-206ENST00000558157 CXorf38Q8TB03 319 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 CLSTN3Q9BQT9 956 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 SLC25A23Q9BV35 468 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 MUC13Q9H3R2 512 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 NECTIN3Q9NQS3 549 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 ZNF229Q9UJW7 825 aa10.89□□□□□ -0.67
USP3-206ENST00000558157 EIF3LQ9Y262 564 aaKnown RBP10.89□□□□□ -0.67
USP3-206ENST00000558157 TMA7Q9Y2S6 64 aaKnown RBP10.89□□□□□ -0.67
USP3-206ENST00000558157 KCNU1A8MYU2 1149 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 APOL1O14791 398 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 SNPHO15079 494 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 PIGNO95427 931 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 ABCB1P08183 1280 aaPredicted RBP10.88□□□□□ -0.67
USP3-206ENST00000558157 COL6A1P12109 1028 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 SELPP16109 830 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 ITIH1P19827 911 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 NR4A1P22736 598 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 EEF1B2P24534 225 aaKnown RBP10.88□□□□□ -0.67
USP3-206ENST00000558157 POLR2IP36954 125 aaKnown RBP10.88□□□□□ -0.67
USP3-206ENST00000558157 GRIK1P39086 918 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 PPP5CP53041 499 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 C19orf57Q0VDD7 668 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 MMRN1Q13201 1228 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 FRG1Q14331 258 aaKnown RBP10.88□□□□□ -0.67
USP3-206ENST00000558157 TRIM60Q495X7 471 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 LCN8Q6JVE9 175 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 CYP2R1Q6VVX0 501 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 SCARA5Q6ZMJ2 495 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 DSG4Q86SJ6 1040 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 NT5DC4Q86YG4 428 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 HACE1Q8IYU2 909 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 TNS4Q8IZW8 715 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 SCML4Q8N228 414 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 PHF10Q8WUB8 498 aaKnown RBP10.88□□□□□ -0.67
USP3-206ENST00000558157 LPPQ93052 612 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 TP53INP1Q96A56 240 aa10.88□□□□□ -0.67
USP3-206ENST00000558157 C18orf25Q96B23 403 aaPredicted RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms