RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 PAAF1Q9BRP4 392 aa6.22□□□□□ -1.41
RTF1-204ENST00000558117 RIOK1Q9BRS2 568 aaKnown RBP6.22□□□□□ -1.41
RTF1-204ENST00000558117 FTHL17Q9BXU8 183 aa6.22□□□□□ -1.41
RTF1-204ENST00000558117 NUAK2Q9H093 628 aa6.22□□□□□ -1.41
RTF1-204ENST00000558117 ZBP1Q9H171 429 aa6.22□□□□□ -1.41
RTF1-204ENST00000558117 FZD8Q9H461 694 aa6.22□□□□□ -1.41
RTF1-204ENST00000558117 CDCP1Q9H5V8 836 aa6.22□□□□□ -1.41
RTF1-204ENST00000558117 LMAN1LQ9HAT1 526 aa6.22□□□□□ -1.41
RTF1-204ENST00000558117 PTPRHQ9HD43 1115 aa6.22□□□□□ -1.41
RTF1-204ENST00000558117 MLXIPLQ9NP71 852 aa6.22□□□□□ -1.41
RTF1-204ENST00000558117 PIH1D3Q9NQM4 214 aaKnown RBP6.22□□□□□ -1.41
RTF1-204ENST00000558117 C2orf42Q9NWW7 574 aa6.22□□□□□ -1.41
RTF1-204ENST00000558117 MCM9Q9NXL9 1143 aa6.22□□□□□ -1.41
RTF1-204ENST00000558117 SPG21Q9NZD8 308 aa6.22□□□□□ -1.41
RTF1-204ENST00000558117 PA2G4Q9UQ80 394 aaKnown RBP6.22□□□□□ -1.41
RTF1-204ENST00000558117 BTBD3Q9Y2F9 522 aa6.22□□□□□ -1.41
RTF1-204ENST00000558117 ATG2BQ96BY7 2078 aa6.21□□□□□ -1.41
RTF1-204ENST00000558117 GXYLT2A0PJZ3 443 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 BCLAF3A2AJT9 711 aaKnown RBP6.21□□□□□ -1.42
RTF1-204ENST00000558117 FCHO1O14526 889 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 SKAP2O75563 359 aaPredicted RBP6.21□□□□□ -1.42
RTF1-204ENST00000558117 RPP40O75818 363 aaKnown RBP6.21□□□□□ -1.42
RTF1-204ENST00000558117 ATP5F1P24539 256 aaPredicted RBP6.21□□□□□ -1.42
RTF1-204ENST00000558117 AKT1P31749 480 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 CA8P35219 290 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 ALDH7A1P49419 539 aaKnown RBP6.21□□□□□ -1.42
RTF1-204ENST00000558117 VPS41P49754 854 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 AGTR2P50052 363 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 CLCN4P51793 760 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 TRIP6Q15654 476 aaKnown RBP6.21□□□□□ -1.42
RTF1-204ENST00000558117 ETFDHQ16134 617 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 CNGA3Q16281 694 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 TUBB8Q3ZCM7 444 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 PLK5Q496M5 336 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 C1QL2Q7Z5L3 287 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 GATAD2AQ86YP4 633 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 MYLK4Q86YV6 388 aaPredicted RBP6.21□□□□□ -1.42
RTF1-204ENST00000558117 RPAP2Q8IXW5 612 aaPredicted RBP6.21□□□□□ -1.42
RTF1-204ENST00000558117 SLC39A11Q8N1S5 342 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 GLMPQ8WWB7 406 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 ZNF707Q96C28 371 aaPredicted RBP6.21□□□□□ -1.42
RTF1-204ENST00000558117 ZNF558Q96NG5 402 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 TRIM4Q9C037 500 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 TP63Q9H3D4 680 aaPredicted RBP6.21□□□□□ -1.42
RTF1-204ENST00000558117 AGO4Q9HCK5 861 aaKnown RBP6.21□□□□□ -1.42
RTF1-204ENST00000558117 HEBP1Q9NRV9 189 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 SETD4Q9NVD3 440 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 TUBA8Q9NY65 449 aaPredicted RBP6.21□□□□□ -1.42
RTF1-204ENST00000558117 NYAP2Q9P242 653 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 FBXO9Q9UK97 447 aaPredicted RBP6.21□□□□□ -1.42
RTF1-204ENST00000558117 NDRG2Q9UN36 371 aaKnown RBP6.21□□□□□ -1.42
RTF1-204ENST00000558117 LOXHD1Q8IVV2 1947 aa6.21□□□□□ -1.42
RTF1-204ENST00000558117 LOC105369274A0A096LPK9 316 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 LOC102723532A0A0G2JNH3 316 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 TTC34A8MYJ7 566 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 E5RJQ4 531 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 TRIM38O00635 465 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 TP73O15350 636 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 UQCRFS1P1P0C7P4 283 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 CTSAP10619 480 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 CHRNB1P11230 501 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 MATN1P21941 496 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 PTGER1P34995 402 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 IDUAP35475 653 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 SNAP25P60880 206 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 YPEL5P62699 121 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 TFCP2Q12800 502 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 TRIM14Q14142 442 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 TAF1BQ53T94 588 aaPredicted RBP6.2□□□□□ -1.42
RTF1-204ENST00000558117 PXDC1Q5TGL8 231 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 HIST2H2BCQ6DN03 193 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 ERAP2Q6P179 960 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 SEPT14Q6ZU15 432 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 GET4Q7L5D6 327 aaPredicted RBP6.2□□□□□ -1.42
RTF1-204ENST00000558117 PCGF5Q86SE9 256 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 TRABD2AQ86V40 505 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 NRSN1Q8IZ57 195 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 OR4N4Q8N0Y3 316 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 VPS52Q8N1B4 723 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 NEUROD6Q96NK8 337 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 MECRQ9BV79 373 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 RNF26Q9BY78 433 aaPredicted RBP6.2□□□□□ -1.42
RTF1-204ENST00000558117 USP44Q9H0E7 712 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 PPCSQ9HAB8 311 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 ASNSD1Q9NWL6 643 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 TRNAU1APQ9NX07 287 aaKnown RBP6.2□□□□□ -1.42
RTF1-204ENST00000558117 ANAPC4Q9UJX5 808 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 ZFP37Q9Y6Q3 630 aaPredicted RBP6.2□□□□□ -1.42
RTF1-204ENST00000558117 LAMA4Q16363 1823 aa6.2□□□□□ -1.42
RTF1-204ENST00000558117 AKAP3O75969 853 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 KAT7O95251 611 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 ELAVL4P26378 380 aaKnown RBP6.19□□□□□ -1.42
RTF1-204ENST00000558117 CALML3P27482 149 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 NDUFS1P28331 727 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 ADSSP30520 456 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 THBS4P35443 961 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 HOXD12P35452 270 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 SERPINF1P36955 418 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 STAT6P42226 847 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 IRX4P78413 519 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms