RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 HTR3DQ70Z44 454 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 BEND5Q7L4P6 421 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 BNIPLQ7Z465 357 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 ARHGAP18Q8N392 663 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 INPP5DQ92835 1189 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 IGSF8Q969P0 613 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 STAMBPL1Q96FJ0 436 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 EPAS1Q99814 870 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 EBNA1BP2Q99848 306 aaKnown RBP11.21□□□□□ -0.61
SHMT2-216ENST00000554975 ORAI3Q9BRQ5 295 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 TACO1Q9BSH4 297 aaKnown RBP11.21□□□□□ -0.61
SHMT2-216ENST00000554975 TUBB6Q9BUF5 446 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 KLF16Q9BXK1 252 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-216ENST00000554975 TRIM55Q9BYV6 548 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 ULBP1Q9BZM6 244 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 FAM96AQ9H5X1 160 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 ETNK1Q9HBU6 452 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 MLXIPLQ9NP71 852 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 ABCF3Q9NUQ8 709 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.21□□□□□ -0.61
SHMT2-216ENST00000554975 OSER1Q9NX31 292 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 DTLQ9NZJ0 730 aa11.21□□□□□ -0.61
SHMT2-216ENST00000554975 NYNRINQ9P2P1 1898 aaKnown RBP11.21□□□□□ -0.62
SHMT2-216ENST00000554975 KIF26BQ2KJY2 2108 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 TCRBV7S3A2A0A539 114 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 FAM159BA6NKW6 160 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 ERVH48-1M5A8F1 160 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 PSMD3O43242 534 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 MFSD11O43934 449 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 RFPL3O75679 317 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 TGDSO95455 350 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 HMBSP08397 361 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 NEFHP12036 1026 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 CCNB1P14635 433 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 PGAM1P18669 254 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 OXTRP30559 389 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 RPA3P35244 121 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-216ENST00000554975 GARSP41250 739 aaKnown RBP11.2□□□□□ -0.62
SHMT2-216ENST00000554975 CTSKP43235 329 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 ACADVLP49748 655 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 NEK3P51956 506 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 DAOAP59103 153 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 TPI1P60174 286 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 GBE1Q04446 702 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 STARD3Q14849 445 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 EFTUD2Q15029 972 aaKnown RBP eCLIP11.2□□□□□ -0.626e-8■■■■■ 32.8
SHMT2-216ENST00000554975 GALNTL6Q49A17 601 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 DCAF6Q58WW2 860 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 ATG16L1Q676U5 607 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 FBXL19Q6PCT2 694 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 FAM47EQ6ZV65 393 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 SCD5Q86SK9 330 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 FAM131BQ86XD5 332 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 CTAGE3PQ8IX95 158 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 AGGF1Q8N302 714 aaeCLIP11.2□□□□□ -0.62
SHMT2-216ENST00000554975 PPM1NQ8N819 430 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 CCDC110Q8TBZ0 833 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 SORCS1Q8WY21 1168 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 NDRG1Q92597 394 aaKnown RBP11.2□□□□□ -0.62
SHMT2-216ENST00000554975 FGF11Q92914 225 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 TTC17Q96AE7 1141 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 KLHL29Q96CT2 875 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 LRRC37BQ96QE4 947 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 CDK5RAP1Q96SZ6 601 aaKnown RBP11.2□□□□□ -0.62
SHMT2-216ENST00000554975 SIKE1Q9BRV8 207 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 WDR83Q9BRX9 315 aaKnown RBP11.2□□□□□ -0.62
SHMT2-216ENST00000554975 NRSN2Q9GZP1 204 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 CPNE5Q9HCH3 593 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 CLIC5Q9NZA1 410 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 THAP10Q9P2Z0 257 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-216ENST00000554975 MID2Q9UJV3 735 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 FBXO10Q9UK96 956 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 RPL26L1Q9UNX3 145 aaKnown RBP11.2□□□□□ -0.62
SHMT2-216ENST00000554975 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-216ENST00000554975 AHCTF1Q8WYP5 2266 aa11.2□□□□□ -0.62
SHMT2-216ENST00000554975 UBR5O95071 2799 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-216ENST00000554975 USP9XQ93008 2570 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-216ENST00000554975 BOD1L1Q8NFC6 3051 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 B8ZZF3 427 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 TRIM49D1C9J1S8 452 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 M0QYT0 321 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 RNF103O00237 685 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 BANF1O75531 89 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 UNC5CO95185 931 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 LTFP02788 710 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 DHRS4L1P0CG22 281 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 NQO1P15559 274 aaKnown RBP11.19□□□□□ -0.62
SHMT2-216ENST00000554975 HNRNPH1P31943 449 aaKnown RBP11.19□□□□□ -0.62
SHMT2-216ENST00000554975 FOXN2P32314 431 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 HNF1BP35680 557 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 GRIA4P48058 902 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 NCALDP61601 193 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 KCNC4Q03721 635 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 FRG1Q14331 258 aaKnown RBP11.19□□□□□ -0.62
SHMT2-216ENST00000554975 ZNF234Q14588 700 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 SHBQ15464 509 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 PARP6Q2NL67 630 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 RAB41Q5JT25 222 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 ANKRD20A2Q5SQ80 823 aa11.19□□□□□ -0.62
SHMT2-216ENST00000554975 HP1BP3Q5SSJ5 553 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms