RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 ZCCHC9Q8N567 271 aaKnown RBP12.22□□□□□ -0.45
SHMT2-209ENST00000553949 TP53I13Q8NBR0 393 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-209ENST00000553949 PPHLN1Q8NEY8 458 aaKnown RBP12.22□□□□□ -0.45
SHMT2-209ENST00000553949 DNASE2BQ8WZ79 361 aa12.22□□□□□ -0.45
SHMT2-209ENST00000553949 ATOH1Q92858 354 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-209ENST00000553949 CENPTQ96BT3 561 aa12.22□□□□□ -0.45
SHMT2-209ENST00000553949 NUS1Q96E22 293 aa12.22□□□□□ -0.45
SHMT2-209ENST00000553949 LENG8Q96PV6 779 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-209ENST00000553949 KLF6Q99612 283 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-209ENST00000553949 RHOXF2Q9BQY4 288 aa12.22□□□□□ -0.45
SHMT2-209ENST00000553949 C1QTNF7Q9BXJ2 289 aa12.22□□□□□ -0.45
SHMT2-209ENST00000553949 FZD3Q9NPG1 666 aa12.22□□□□□ -0.45
SHMT2-209ENST00000553949 FAM114A2Q9NRY5 505 aa12.22□□□□□ -0.45
SHMT2-209ENST00000553949 RAD18Q9NS91 495 aa12.22□□□□□ -0.45
SHMT2-209ENST00000553949 KCTD5Q9NXV2 234 aa12.22□□□□□ -0.45
SHMT2-209ENST00000553949 EIF2B4Q9UI10 523 aaKnown RBP12.22□□□□□ -0.45
SHMT2-209ENST00000553949 CD84Q9UIB8 345 aa12.22□□□□□ -0.45
SHMT2-209ENST00000553949 PKP3Q9Y446 797 aa12.22□□□□□ -0.45
SHMT2-209ENST00000553949 TCAF1Q9Y4C2 921 aa12.22□□□□□ -0.45
SHMT2-209ENST00000553949 KCTD3Q9Y597 815 aa12.22□□□□□ -0.45
SHMT2-209ENST00000553949 NUMA1Q14980 2115 aa12.22□□□□□ -0.45
SHMT2-209ENST00000553949 PRAMEF26H0Y7S4 382 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 PPFIA2O75334 1257 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 BPIP17213 487 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 ITPKAP23677 461 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 AKT2P31751 481 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 ARL4CP56559 192 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 TUBB4BP68371 445 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 IRF4Q15306 451 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 LPAL2Q16609 132 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 HIF1AQ16665 826 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 WSCD2Q2TBF2 565 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 MSS51Q4VC12 460 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 DNAJC21Q5F1R6 531 aaKnown RBP12.21□□□□□ -0.45
SHMT2-209ENST00000553949 ARMC3Q5W041 872 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 ZDHHC20Q5W0Z9 365 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 CASC4Q6P4E1 433 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 ZNF765Q7L2R6 523 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 NLRP9Q7RTR0 991 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 IFT20Q8IY31 132 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 RGL4Q8IZJ4 473 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 PDIK1LQ8N165 341 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 AGGF1Q8N302 714 aaeCLIP12.21□□□□□ -0.45
SHMT2-209ENST00000553949 MPP5Q8N3R9 675 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 TMEM145Q8NBT3 493 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 DENND6BQ8NEG7 585 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 OR4K2Q8NGD2 314 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 FBXO25Q8TCJ0 367 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 PTCD2Q8WV60 388 aaKnown RBP12.21□□□□□ -0.45
SHMT2-209ENST00000553949 IFT81Q8WYA0 676 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 AP2M1Q96CW1 435 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 SERAC1Q96JX3 654 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 MYOCQ99972 504 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 KIFC1Q9BW19 673 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 MIR1-1HGQ9H1L0 117 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 ABCG8Q9H221 673 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 FAM83DQ9H4H8 585 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 GDF3Q9NR23 364 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 MBNL1Q9NR56 388 aaKnown RBP12.21□□□□□ -0.45
SHMT2-209ENST00000553949 CHRAC1Q9NRG0 131 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 HCN4Q9Y3Q4 1203 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 SLCO1B1Q9Y6L6 691 aa12.21□□□□□ -0.45
SHMT2-209ENST00000553949 PLXND1Q9Y4D7 1925 aa12.21□□□□□ -0.46
SHMT2-209ENST00000553949 EML5Q05BV3 1969 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 MAGEB16A2A368 324 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 CCDC78A2IDD5 438 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 FPGTO14772 594 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 BANF1O75531 89 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 PCCBP05166 539 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 PSMA3P25788 255 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 DCDC1P59894 354 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 TMPRSS15P98073 1019 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 DPTQ07507 201 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 DHX9Q08211 1270 aaKnown RBP12.2□□□□□ -0.46
SHMT2-209ENST00000553949 SKIDA1Q1XH10 827 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 BBS9Q3SYG4 887 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 TSTD2Q5T7W7 516 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 ALS2CLQ60I27 953 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 ESRP1Q6NXG1 681 aaKnown RBP12.2□□□□□ -0.46
SHMT2-209ENST00000553949 NLRP8Q86W28 1048 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 GPR26Q8NDV2 337 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 OR13C4Q8NGS5 318 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 C1orf216Q8TAB5 229 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 STYXQ8WUJ0 223 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 SCAMP4Q969E2 229 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 DNAJC1Q96KC8 554 aaKnown RBP12.2□□□□□ -0.46
SHMT2-209ENST00000553949 SIGLEC10Q96LC7 697 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 ZNF778Q96MU6 729 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 SLC6A18Q96N87 628 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 PLEKHG4BQ96PX9 1271 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 C19orf43Q9BQ61 176 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 RIOK2Q9BVS4 552 aaKnown RBP12.2□□□□□ -0.46
SHMT2-209ENST00000553949 FAM129AQ9BZQ8 928 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 CDH19Q9H159 772 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 MRM3Q9HC36 420 aaKnown RBP12.2□□□□□ -0.46
SHMT2-209ENST00000553949 IL26Q9NPH9 171 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 ZDHHC18Q9NUE0 388 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 NLE1Q9NVX2 485 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-209ENST00000553949 SAMD15Q9P1V8 674 aa12.2□□□□□ -0.46
SHMT2-209ENST00000553949 NFKBIL1Q9UBC1 381 aaPredicted RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms