RNA–Protein interactions for RNA: ENST00000550283.1

RAB5B-208, Transcript of RAB5B, member RAS oncogene family, human

TSL 3

Gene RAB5B, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB5B-208	ENST00000550283	TSACC	Q96A04	125 aa	Predicted RBP	11.21	□□□□□ -0.61
RAB5B-208	ENST00000550283	MS4A14	Q96JA4	679 aa		11.21	□□□□□ -0.61
RAB5B-208	ENST00000550283	FCRL5	Q96RD9	977 aa		11.21	□□□□□ -0.61
RAB5B-208	ENST00000550283	APOO	Q9BUR5	198 aa		11.21	□□□□□ -0.61
RAB5B-208	ENST00000550283	CLPB	Q9H078	707 aa		11.21	□□□□□ -0.61
RAB5B-208	ENST00000550283	GBA3	Q9H227	469 aa		11.21	□□□□□ -0.61
RAB5B-208	ENST00000550283	ERVMER34-1	Q9H9K5	563 aa		11.21	□□□□□ -0.61
RAB5B-208	ENST00000550283	MRPL40	Q9NQ50	206 aa	Known RBP	11.21	□□□□□ -0.61
RAB5B-208	ENST00000550283	DNAJC28	Q9NX36	388 aa		11.21	□□□□□ -0.61
RAB5B-208	ENST00000550283	TPX2	Q9ULW0	747 aa	Known RBP	11.21	□□□□□ -0.61
RAB5B-208	ENST00000550283	SHOC2	Q9UQ13	582 aa		11.21	□□□□□ -0.61
RAB5B-208	ENST00000550283	ST14	Q9Y5Y6	855 aa		11.21	□□□□□ -0.61
RAB5B-208	ENST00000550283	LRP4	O75096	1905 aa		11.21	□□□□□ -0.62
RAB5B-208	ENST00000550283	LY6G6E	A0A0G2JKS1	128 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	LOC285095	A0A1B0GVY8	99 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	CFAP69	A5D8W1	941 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	ANKRD66	B4E2M5	251 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	GPR39	O43194	453 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	BUD23	O43709	281 aa	Known RBP	11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	LIAS	O43766	372 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	PCDHGA12	O60330	932 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	USP12	O75317	370 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	PIAS2	O75928	621 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	SPINK2	P20155	84 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	CSRP1	P21291	193 aa	Known RBP	11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	ADRA1A	P35348	466 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	RABIF	P47224	123 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	POLD2	P49005	469 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	EPHB1	P54762	984 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	CDK18	Q07002	472 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	MSLN	Q13421	630 aa	Predicted RBP	11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	C1orf61	Q13536	156 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	DENND5A	Q6IQ26	1287 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	PNCK	Q6P2M8	343 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	USP45	Q70EL2	814 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	CDKL3	Q8IVW4	592 aa	Predicted RBP	11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	TXLNB	Q8N3L3	684 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	TTC30B	Q8N4P2	665 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	EID2	Q8N6I1	236 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	IPMK	Q8NFU5	416 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	SETD7	Q8WTS6	366 aa	Known RBP	11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	COG1	Q8WTW3	980 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	NUS1	Q96E22	293 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	PDXP	Q96GD0	296 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	LYSMD1	Q96S90	227 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	FGF22	Q9HCT0	170 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	FAM153A	Q9UHL3	310 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	RSPH14	Q9UHP6	348 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	TMPRSS11E	Q9UL52	423 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	CNOT6	Q9ULM6	557 aa	Known RBP	11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	WASF3	Q9UPY6	502 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	PCDHGB2	Q9Y5G2	931 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283		U3KQA8	63 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	FRY	Q5TBA9	3013 aa		11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	ARID1B	Q8NFD5	2236 aa	Predicted RBP	11.2	□□□□□ -0.62
RAB5B-208	ENST00000550283	C1orf232	A0A0U1RR37	186 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	FADS2P1	A8MWK0	482 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	FFAR2	O15552	330 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	NDST3	O95803	873 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	SLC4A1	P02730	911 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	CSF2	P04141	144 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	ZSCAN5DP	P0CG00	497 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	CYP2A6	P11509	494 aa	Predicted RBP	11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	NME1	P15531	152 aa	Known RBP	11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	CES1	P23141	567 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	TRIM23	P36406	574 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	KCNJ1	P48048	391 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	OVGP1	Q12889	678 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	DNAJC3	Q13217	504 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	SLC14A1	Q13336	389 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	NFATC4	Q14934	902 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	ST3GAL2	Q16842	350 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	ZNF569	Q5MCW4	686 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	ZNF648	Q5T619	568 aa	Predicted RBP	11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	ESRP1	Q6NXG1	681 aa	Known RBP	11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	BZW1	Q7L1Q6	419 aa	Known RBP	11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	HEATR4	Q86WZ0	1026 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	KLHDC8B	Q8IXV7	354 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	GPR26	Q8NDV2	337 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	ZNF548	Q8NEK5	533 aa	Predicted RBP	11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	TRIM58	Q8NG06	486 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	CCL4L1	Q8NHW4	92 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	RHBDD1	Q8TEB9	315 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	SPATA13	Q96N96	652 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	LRRC61	Q9BV99	259 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	FICD	Q9BVA6	458 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	RIOK2	Q9BVS4	552 aa	Known RBP	11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	CARD9	Q9H257	536 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	ARFGAP3	Q9NP61	516 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	PIH1D1	Q9NWS0	290 aa	Known RBP	11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	ZNF711	Q9Y462	761 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	PLEKHM1	Q9Y4G2	1056 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	KCTD3	Q9Y597	815 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	OAS3	Q9Y6K5	1087 aa	Known RBP	11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	ACACB	O00763	2458 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	MAP1B	P46821	2468 aa	Known RBP	11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	SCN8A	Q9UQD0	1980 aa		11.19	□□□□□ -0.62
RAB5B-208	ENST00000550283	PCNX2	A6NKB5	2137 aa		11.18	□□□□□ -0.62
RAB5B-208	ENST00000550283	TDRD6	O60522	2096 aa	Known RBP	11.18	□□□□□ -0.62
RAB5B-208	ENST00000550283	MYLK	Q15746	1914 aa		11.18	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 24 ms