RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 AAGABQ6PD74 315 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 KYAT3Q6YP21 454 aaKnown RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 FRMD7Q6ZUT3 714 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 FRA10AC1Q70Z53 315 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 SZRD1Q7Z422 152 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 P3H2Q8IVL5 708 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 ZNF781Q8N8C0 355 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 C12orf29Q8N999 325 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 TMEM161BQ8NDZ6 487 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 NPLOC4Q8TAT6 608 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 RNF139Q8WU17 664 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 KCTD4Q8WVF5 259 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 TRIB2Q92519 343 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 FAM162AQ96A26 154 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 VWCEQ96DN2 955 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 MRGPRX3Q96LB0 322 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 TEX13BQ9BXU2 312 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 MRPS26Q9BYN8 205 aaKnown RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 LRRC40Q9H9A6 602 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 CXorf21Q9HAI6 301 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 OLA1Q9NTK5 396 aaKnown RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 STK39Q9UEW8 545 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 VANGL2Q9ULK5 521 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 DRG1Q9Y295 367 aaKnown RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 HEMK1Q9Y5R4 338 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 LOC100506127A0A0U1RQW1 187 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 TRPC5OSA6NMA1 111 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 KCNU1A8MYU2 1149 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 KPNA4O00629 521 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 ARHGEF9O43307 516 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 DDHD2O94830 711 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 SPATA31D3P0C874 917 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 EPXP11678 715 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 NCAM1P13591 858 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 CD1EP15812 388 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 PSMB4P28070 264 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 PPARGP37231 505 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 GPX6P59796 221 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 WASHC5Q12768 1159 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 PPP1R8Q12972 351 aaKnown RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 CTBP1Q13363 440 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 TMEM132DQ14C87 1099 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 CDHR3Q6ZTQ4 885 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 SPATA31D4Q6ZUB0 917 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 BBS12Q6ZW61 710 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 CCDC80Q76M96 950 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 GPR142Q7Z601 462 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 MILR1Q7Z6M3 343 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 HERC6Q8IVU3 1022 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 CBR4Q8N4T8 237 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 FIG4Q92562 907 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 RMDN1Q96DB5 314 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 OMA1Q96E52 524 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 SPATA33Q96N06 139 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 GPATCH1Q9BRR8 931 aaKnown RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 CLK4Q9HAZ1 481 aaKnown RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 ANKEF1Q9NU02 776 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 DDIT4Q9NX09 232 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 PTTG2Q9NZH5 202 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 TMEM216Q9P0N5 145 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 TSPAN16Q9UKR8 245 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 COQ6Q9Y2Z9 468 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 RIPK3Q9Y572 518 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 RAD54BQ9Y620 910 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 U3KQV3 271 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 CCDC163A0A0D9SF12 145 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 TMEM191CA6NGB0 347 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 SLC15A5A6NIM6 579 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 E5RI56 91 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 HDAC3O15379 428 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 LDLRP01130 860 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 CYP1A1P04798 512 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 HMBSP08397 361 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 CSH1P0DML2 217 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 CSH2P0DML3 217 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 CD68P34810 354 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 NDST1P52848 882 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 THOP1P52888 689 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 PGGT1BP53609 377 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 GBE1Q04446 702 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 PRKCZQ05513 592 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 CHRNB3Q05901 458 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 PRKAA1Q13131 559 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 KRT72Q14CN4 511 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 SUZ12Q15022 739 aaKnown RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 PGS1Q32NB8 556 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 TRIM61Q5EBN2 209 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 POC5Q8NA72 575 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 SLC4A11Q8NBS3 891 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 HTR3CQ8WXA8 447 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 LPGAT1Q92604 370 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 SLC39A3Q9BRY0 314 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 ACE2Q9BYF1 805 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 FAM105AQ9NUU6 356 aa5.49□□□□□ -1.53
LIMA1-203ENST00000547825 INTS7Q9NVH2 962 aaKnown RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 CGGBP1Q9UFW8 167 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 CPSF3Q9UKF6 684 aaKnown RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 GPR55Q9Y2T6 319 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-203ENST00000547825 FNDC1Q4ZHG4 1894 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-203ENST00000547825 TMEM247A6NEH6 219 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms