RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 HEXIM1O94992 359 aaKnown RBP8.47□□□□□ -1.05
USP28-215ENST00000545608 RARAP10276 462 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 GLB1P16278 677 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 KELP23276 732 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 CCKBRP32239 447 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 PCK1P35558 622 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 RENBPP51606 427 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 ZNF135P52742 658 aaPredicted RBP8.47□□□□□ -1.05
USP28-215ENST00000545608 MAXP61244 160 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 B4GALNT1Q00973 533 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 ZFP36L1Q07352 338 aaKnown RBP8.47□□□□□ -1.05
USP28-215ENST00000545608 KLHL30Q0D2K2 578 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 TRAF2Q12933 501 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 SRSF6Q13247 344 aaKnown RBP8.47□□□□□ -1.05
USP28-215ENST00000545608 EIF3IQ13347 325 aaKnown RBP8.47□□□□□ -1.05
USP28-215ENST00000545608 HLTFQ14527 1009 aaKnown RBP eCLIP8.47□□□□□ -1.05
USP28-215ENST00000545608 TGIF1Q15583 401 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 CNGA3Q16281 694 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 DPYSL2Q16555 572 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 SMTNL2Q2TAL5 461 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 FILIP1LQ4L180 1135 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 C14orf28Q4W4Y0 310 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 CERCAMQ5T4B2 595 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 DENND2CQ68D51 928 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 SPECC1LQ69YQ0 1117 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 TXNRD3NBQ6F5E7 133 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 CCDC81Q6ZN84 652 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 TMPRSS9Q7Z410 1059 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 HSD11B1LQ7Z5J1 315 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 POLNQ7Z5Q5 900 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 NRROSQ86YC3 692 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 JAMLQ86YT9 394 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 PDCD6IPQ8WUM4 868 aaKnown RBP8.47□□□□□ -1.05
USP28-215ENST00000545608 HSPH1Q92598 858 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 TMEM74Q96NL1 305 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 ZNF599Q96NL3 588 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 NUDCD1Q96RS6 583 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 STRADBQ9C0K7 418 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 ISCUQ9H1K1 167 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 DPEP2Q9H4A9 486 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 WDR26Q9H7D7 661 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 SUDS3Q9H7L9 328 aaPredicted RBP8.47□□□□□ -1.05
USP28-215ENST00000545608 ZWILCHQ9H900 591 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 NOD2Q9HC29 1040 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 SPATS2LQ9NUQ6 558 aaKnown RBP8.47□□□□□ -1.05
USP28-215ENST00000545608 LRIT1Q9P2V4 623 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 PISDQ9UG56 409 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 APPL1Q9UKG1 709 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 PCDHGA7Q9Y5G6 932 aa8.47□□□□□ -1.05
USP28-215ENST00000545608 A0A0U1RQS6 177 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 A0A1B0GTH6 734 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 A0A1W2PQC6 194 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 PRSS38A1L453 326 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 SMTNL1A8MU46 457 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 GOLGA6L22H0YM25 854 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 CPP00450 1065 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 FGF1P05230 155 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 CEACAM5P06731 702 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 MYBL1P10243 752 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 KRT10P13645 584 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 PNLIPP16233 465 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 ITIH1P19827 911 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 LHCGRP22888 699 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 VIPR1P32241 457 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 ARL4AP40617 200 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 ETV5P41161 510 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 ETV3P41162 512 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 SERPINB4P48594 390 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 MAZP56270 477 aaKnown RBP8.46□□□□□ -1.06
USP28-215ENST00000545608 ARHGEF7Q14155 803 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 ZNF235Q14590 738 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 NR1I3Q14994 352 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 BOLA3Q53S33 107 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 TMCO3Q6UWJ1 677 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 RFLNAQ6ZTI6 216 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 SPRED1Q7Z699 444 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 TSPAN33Q86UF1 283 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 HEATR4Q86WZ0 1026 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 C17orf82Q86X59 251 aaPredicted RBP8.46□□□□□ -1.06
USP28-215ENST00000545608 GPBAR1Q8TDU6 330 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 NUS1Q96E22 293 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 DTD2Q96FN9 168 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 BTBD6Q96KE9 485 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 CSPG4P5Q96PW8 444 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 SMIM14Q96QK8 99 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 CCNL2Q96S94 520 aaPredicted RBP8.46□□□□□ -1.06
USP28-215ENST00000545608 MGME1Q9BQP7 344 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 BPIFA3Q9BQP9 254 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 TEX101Q9BY14 249 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 NAT10Q9H0A0 1025 aaKnown RBP8.46□□□□□ -1.06
USP28-215ENST00000545608 CARS2Q9HA77 564 aaKnown RBP8.46□□□□□ -1.06
USP28-215ENST00000545608 PCDH18Q9HCL0 1135 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 MRPL47Q9HD33 250 aaKnown RBP8.46□□□□□ -1.06
USP28-215ENST00000545608 PHTF1Q9UMS5 762 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 LOXL2Q9Y4K0 774 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 ST14Q9Y5Y6 855 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 SCINQ9Y6U3 715 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 SMG1Q96Q15 3661 aaKnown RBP8.46□□□□□ -1.06
USP28-215ENST00000545608 LRRK1Q38SD2 2015 aa8.46□□□□□ -1.06
USP28-215ENST00000545608 A0A1W2PQ67 120 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms