RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 SDCCAG3Q96C92 435 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 MRPL9Q9BYD2 267 aaKnown RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 LIN28AQ9H9Z2 209 aaKnown RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 SCUBE2Q9NQ36 999 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 NECTIN3Q9NQS3 549 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 TMEM161AQ9NX61 479 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 DNMT3BQ9UBC3 853 aaKnown RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 ZNF639Q9UID6 485 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 CDC14AQ9UNH5 594 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 NAALAD2Q9Y3Q0 740 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 KIAA1549LQ6ZVL6 1849 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 KPNA7A9QM74 516 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 B8ZZF3 427 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 K7ENM7 598 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 TAF4O00268 1085 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 NCAM2O15394 837 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 PLOD3O60568 738 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 RASAL1O95294 804 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ABCB1P08183 1280 aaPredicted RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 POU2F2P09086 479 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 TFPTP0C1Z6 253 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 MLNP12872 115 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 KCNE1P15382 129 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ATP4BP51164 291 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 MERTKQ12866 999 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 CEACAM7Q14002 265 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 DPYSL3Q14195 570 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 PCLAFQ15004 111 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ZBTB6Q15916 424 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 XKR9Q5GH70 373 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 MDH1BQ5I0G3 518 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 TMTC4Q5T4D3 741 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 NXNQ6DKJ4 435 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 MFSD7Q6UXD7 560 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 C15orf39Q6ZRI6 1047 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 KIAA0408Q6ZU52 694 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ARMC8Q8IUR7 673 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ADGRF2Q8IZF7 708 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 SMG8Q8ND04 991 aaKnown RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 SGCDQ92629 289 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 CCDC124Q96CT7 223 aaKnown RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 EGLN2Q96KS0 407 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ZNF512Q96ME7 567 aaPredicted RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 CYP2S1Q96SQ9 504 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ACO2Q99798 780 aaKnown RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 CNPY3Q9BT09 278 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ADI1Q9BV57 179 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 SLC4A5Q9BY07 1137 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 C20orf27Q9GZN8 174 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 KLHL25Q9H0H3 589 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 FAM124BQ9H5Z6 455 aaPredicted RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 WDR41Q9HAD4 459 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ZBTB26Q9HCK0 441 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 CCDC177Q9NQR7 707 aaPredicted RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 PKD2L2Q9NZM6 624 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 PCDHB8Q9UN66 801 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 PCDHGB1Q9Y5G3 927 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ABCB7O75027 752 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 AVILO75366 819 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 GMNNO75496 209 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 MYO1DO94832 1006 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 STAU1O95793 577 aaKnown RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 JUNP05412 331 aaKnown RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 CTSHP09668 335 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 TYRP1P17643 537 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 CYP2C18P33260 490 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 GRM5P41594 1212 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ARCN1P48444 511 aaKnown RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 CLCN3P51790 818 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ECT2LQ008S8 904 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 EPS8Q12929 822 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 PMS2P3Q13401 168 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 IKZF1Q13422 519 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 DUSP7Q16829 419 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 MTERF2Q49AM1 385 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 FGD3Q5JSP0 725 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 BROXQ5VW32 411 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 ANKRD22Q5VYY1 191 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 PRMT9Q6P2P2 845 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 THNSL2Q86YJ6 484 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 LGI2Q8N0V4 545 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 CLYBLQ8N0X4 340 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 MFSD4AQ8N468 514 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 SFRP1Q8N474 314 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 GALNT6Q8NCL4 622 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 PAPD5Q8NDF8 572 aaKnown RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 ABHD11Q8NFV4 315 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 SPATA18Q8TC71 538 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 HPS1Q92902 700 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 KLHL32Q96NJ5 620 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 PHF12Q96QT6 1004 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 CPXM1Q96SM3 734 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 LBHD1Q9BQE6 289 aaPredicted RBP5.27□□□□□ -1.57
USP28-213ENST00000544967 TMEM175Q9BSA9 504 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 NAT9Q9BTE0 207 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 HEMGNQ9BXL5 484 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 HAPLN2Q9GZV7 340 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 CLPBQ9H078 707 aa5.27□□□□□ -1.57
USP28-213ENST00000544967 TM9SF3Q9HD45 589 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms