RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 XYLBO75191 536 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 GCATO75600 419 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 CCT3P49368 545 aaKnown RBP14.23□□□□□ -0.13
LIMS1-215ENST00000544547 CDK18Q07002 472 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 BST2Q10589 180 aaKnown RBP14.23□□□□□ -0.13
LIMS1-215ENST00000544547 TOP3AQ13472 1001 aaPredicted RBP14.23□□□□□ -0.13
LIMS1-215ENST00000544547 PIGGQ5H8A4 983 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 ZC3H12BQ5HYM0 836 aaKnown RBP14.23□□□□□ -0.13
LIMS1-215ENST00000544547 METTL7BQ6UX53 244 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 RAVER1Q8IY67 606 aaKnown RBP14.23□□□□□ -0.13
LIMS1-215ENST00000544547 ZNF567Q8N184 647 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 TUT1Q9H6E5 874 aaKnown RBP14.23□□□□□ -0.13
LIMS1-215ENST00000544547 AMBNQ9NP70 447 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 DTLQ9NZJ0 730 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 LEF1Q9UJU2 399 aaPredicted RBP14.23□□□□□ -0.13
LIMS1-215ENST00000544547 C7orf72A4D263 438 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 AZIN1O14977 448 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 PMM2O15305 246 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 IPO13O94829 963 aaKnown RBP14.23□□□□□ -0.13
LIMS1-215ENST00000544547 BMP10O95393 424 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 MLNP12872 115 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 ILF2Q12905 390 aaKnown RBP14.23□□□□□ -0.13
LIMS1-215ENST00000544547 TMEM236Q5W0B7 351 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 OTULINQ96BN8 352 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 ACO2Q99798 780 aaKnown RBP14.23□□□□□ -0.13
LIMS1-215ENST00000544547 IRF2BPLQ9H1B7 796 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 TBC1D14Q9P2M4 693 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 SUCOQ9UBS9 1254 aaKnown RBP14.23□□□□□ -0.13
LIMS1-215ENST00000544547 BTBD19C9JJ37 291 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 ALDH1A1P00352 501 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 NR4A2P43354 598 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 VBP1P61758 197 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 ZNF252P-AS1Q0IIN9 211 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 PPP1R3AQ16821 1122 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 PMF1Q6P1K2 205 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 NAPRTQ6XQN6 538 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 PRR23CQ6ZRP0 262 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 AHSA2Q719I0 299 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 DEFB132Q7Z7B7 95 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 SLC16A10Q8TF71 515 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 TPD52L3Q96J77 140 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 RPL10LQ96L21 214 aaKnown RBP14.23□□□□□ -0.13
LIMS1-215ENST00000544547 NTPCRQ9BSD7 190 aaKnown RBP14.23□□□□□ -0.13
LIMS1-215ENST00000544547 MUC3BQ9H195 1237 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 LHX5Q9H2C1 402 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 CATSPERBQ9H7T0 1116 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 CD320Q9NPF0 282 aa14.23□□□□□ -0.13
LIMS1-215ENST00000544547 ABI2Q9NYB9 513 aaPredicted RBP14.23□□□□□ -0.13
LIMS1-215ENST00000544547 TP73O15350 636 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 B4GAT1O43505 415 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 INSRRP14616 1297 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 GRK3P35626 688 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 ATP6V1E1P36543 226 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 HARS2P49590 506 aaKnown RBP14.22□□□□□ -0.13
LIMS1-215ENST00000544547 TKTL1P51854 596 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 TAS2R39P59534 338 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 GRM2Q14416 872 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 MEP1AQ16819 746 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 MRNIPQ6NTE8 343 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 ARMC8Q8IUR7 673 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 CDYL2Q8N8U2 506 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 ST13P5Q8NFI4 369 aaPredicted RBP14.22□□□□□ -0.13
LIMS1-215ENST00000544547 HEXDCQ8WVB3 486 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 HMGXB4Q9UGU5 601 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 PTBP2Q9UKA9 531 aaKnown RBP14.22□□□□□ -0.13
LIMS1-215ENST00000544547 EIF3LQ9Y262 564 aaKnown RBP14.22□□□□□ -0.13
LIMS1-215ENST00000544547 FAM32AQ9Y421 112 aaKnown RBP14.22□□□□□ -0.13
LIMS1-215ENST00000544547 C2CD4BA6NLJ0 364 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 CCL22O00626 93 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 DLX3O60479 287 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 RAB14P61106 215 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 EPS8Q12929 822 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 RAB6CQ53S08 254 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 PCID2Q5JVF3 399 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 Q6ZNX1 250 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 EFL1Q7Z2Z2 1120 aaKnown RBP14.22□□□□□ -0.13
LIMS1-215ENST00000544547 ZNF420Q8TAQ5 688 aaPredicted RBP14.22□□□□□ -0.13
LIMS1-215ENST00000544547 TBL1YQ9BQ87 522 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 RAB6CQ9H0N0 254 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 ARHGAP17Q68EM7 881 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 IL27RAQ6UWB1 636 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 R3HCC1LQ7Z5L2 792 aaKnown RBP14.22□□□□□ -0.13
LIMS1-215ENST00000544547 CCDC185Q8N715 623 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 TRUB1Q8WWH5 349 aaKnown RBP14.22□□□□□ -0.13
LIMS1-215ENST00000544547 PEBP4Q96S96 227 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 KCTD15Q96SI1 283 aaPredicted RBP14.22□□□□□ -0.13
LIMS1-215ENST00000544547 HGH1Q9BTY7 390 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 DPY30Q9C005 99 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 CDT1Q9H211 546 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 RPF2Q9H7B2 306 aaKnown RBP14.22□□□□□ -0.13
LIMS1-215ENST00000544547 GIT1Q9Y2X7 761 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 HES2Q9Y543 173 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 COL18A1P39060 1754 aa14.22□□□□□ -0.13
LIMS1-215ENST00000544547 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.21□□□□□ -0.13
LIMS1-215ENST00000544547 ANXA6P08133 673 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 FMO3P31513 532 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 PNPLA4P41247 253 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 OTOP3Q7RTS5 596 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 IGFN1Q86VF2 1251 aa14.21□□□□□ -0.13
LIMS1-215ENST00000544547 NIPA2Q8N8Q9 360 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms