RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ARIH1Q9Y4X5 557 aaPredicted RBP16.31■□□□□ 0.2
COL4A1-204ENST00000543140 CPQQ9Y646 472 aa16.31■□□□□ 0.2
COL4A1-204ENST00000543140 K7ERQ8 282 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 RHOBTB1O94844 696 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 OGNP20774 298 aaKnown RBP16.3■□□□□ 0.2
COL4A1-204ENST00000543140 PRDX6P30041 224 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 CDC25CP30307 473 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 CDH13P55290 713 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 C1QTNF8P60827 252 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 BTKQ06187 659 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 OR4D1Q15615 310 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 CLEC6AQ6EIG7 209 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 OR6K2Q8NGY2 324 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 ACTRT2Q8TDY3 377 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 N4BP2L2Q92802 583 aaPredicted RBP16.3■□□□□ 0.2
COL4A1-204ENST00000543140 RTKNQ9BST9 563 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 AARSD1Q9BTE6 412 aaKnown RBP16.3■□□□□ 0.2
COL4A1-204ENST00000543140 HERC2P3Q9BVR0 1158 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 GSTO2Q9H4Y5 243 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 EML4Q9HC35 981 aaKnown RBP16.3■□□□□ 0.2
COL4A1-204ENST00000543140 SAGE1Q9NXZ1 904 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 PLK2Q9NYY3 685 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 FKBPLQ9UIM3 349 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 DOCK6Q96HP0 2047 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 RGSL1A5PLK6 1076 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 LRRC14BA6NHZ5 514 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 TRPC5OSA6NMA1 111 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 NDUFS3O75489 264 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 SRP72O76094 671 aaKnown RBP16.3■□□□□ 0.2
COL4A1-204ENST00000543140 SIX3O95343 332 aaPredicted RBP16.3■□□□□ 0.2
COL4A1-204ENST00000543140 ACRP10323 421 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 THRAP10827 490 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 IMPDH1P20839 514 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 CSKP41240 450 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 CYP4F8P98187 520 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 CDH18Q13634 790 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 TYSND1Q2T9J0 566 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 PAQR3Q6TCH7 311 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 SLC22A9Q8IVM8 553 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 PIANPQ8IYJ0 282 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 TCEAL8Q8IYN2 117 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 HIPK4Q8NE63 616 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 TTC1Q99614 292 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 CCDC28BQ9BUN5 200 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 ADGRE3Q9BY15 652 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 MRPL17Q9NRX2 175 aaKnown RBP16.3■□□□□ 0.2
COL4A1-204ENST00000543140 NMRK1Q9NWW6 199 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 LRRC42Q9Y546 428 aa16.3■□□□□ 0.2
COL4A1-204ENST00000543140 COPG1Q9Y678 874 aaKnown RBP16.3■□□□□ 0.2
COL4A1-204ENST00000543140 UBXN8O00124 270 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 GPR39O43194 453 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 BMP1P13497 986 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 LPOP22079 712 aaPredicted RBP16.29■□□□□ 0.2
COL4A1-204ENST00000543140 SLC26A3P40879 764 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 RHOAP61586 193 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 PPP1R3AQ16821 1122 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 PSAPL1Q6NUJ1 521 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 AFTPHQ6ULP2 937 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 DDX53Q86TM3 631 aaKnown RBP16.29■□□□□ 0.2
COL4A1-204ENST00000543140 LPGAT1Q92604 370 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 TM6SF2Q9BZW4 377 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 ZNF385DQ9H6B1 395 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 GALPQ9UBC7 116 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 VPS51Q9UID3 782 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 RIMKLBQ9ULI2 386 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 PCDHB9Q9Y5E1 797 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 OBSL1O75147 1896 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 KIAA0100Q14667 2235 aaKnown RBP16.29■□□□□ 0.2
COL4A1-204ENST00000543140 PPP6CO00743 305 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 OR1I1O60431 355 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 BAG2O95816 211 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 PPP3CCP48454 512 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 CYLC2Q14093 348 aaPredicted RBP16.29■□□□□ 0.2
COL4A1-204ENST00000543140 PFKFB4Q16877 469 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 MUM1Q2TAK8 710 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 FBXO48Q5FWF7 155 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 ZNF678Q5SXM1 525 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 PGM2L1Q6PCE3 622 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 LRRC74BQ6ZQY2 392 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 MYLK4Q86YV6 388 aaPredicted RBP16.29■□□□□ 0.2
COL4A1-204ENST00000543140 KIRREL3Q8IZU9 778 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 PTGR2Q8N8N7 351 aaPredicted RBP16.29■□□□□ 0.2
COL4A1-204ENST00000543140 MAB21L3Q8N8X9 362 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 NAF1Q96HR8 494 aaKnown RBP16.29■□□□□ 0.2
COL4A1-204ENST00000543140 CCDC68Q9H2F9 335 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 IL21Q9HBE4 155 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 LHX3Q9UBR4 397 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 MED16Q9Y2X0 877 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 GBF1Q92538 1859 aa16.29■□□□□ 0.2
COL4A1-204ENST00000543140 CCDC189A1A4V9 331 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 NVLO15381 856 aaKnown RBP16.28■□□□□ 0.2
COL4A1-204ENST00000543140 GREM1O60565 184 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 SMIM24O75264 130 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 LUC7L3O95232 432 aaKnown RBP16.28■□□□□ 0.2
COL4A1-204ENST00000543140 GJA1P17302 382 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 GABRR2P28476 465 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 MC4RP32245 332 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 VHLP40337 213 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 PTPRNQ16849 979 aa16.28■□□□□ 0.2
COL4A1-204ENST00000543140 UNC50Q53HI1 259 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms