RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 Q6ZVL8 140 aa12.99□□□□□ -0.33
CCDC42-202ENST00000539522 USP45Q70EL2 814 aa12.99□□□□□ -0.33
CCDC42-202ENST00000539522 C11orf74Q86VG3 221 aa12.99□□□□□ -0.33
CCDC42-202ENST00000539522 DCLK2Q8N568 766 aa12.99□□□□□ -0.33
CCDC42-202ENST00000539522 CXorf40AQ8TE69 158 aa12.99□□□□□ -0.33
CCDC42-202ENST00000539522 ASB12Q8WXK4 309 aa12.99□□□□□ -0.33
CCDC42-202ENST00000539522 LRRC45Q96CN5 670 aa12.99□□□□□ -0.33
CCDC42-202ENST00000539522 LENG8Q96PV6 779 aaPredicted RBP12.99□□□□□ -0.33
CCDC42-202ENST00000539522 ARRDC1-AS1Q9H2J1 176 aa12.99□□□□□ -0.33
CCDC42-202ENST00000539522 LRRC40Q9H9A6 602 aa12.99□□□□□ -0.33
CCDC42-202ENST00000539522 TM9SF3Q9HD45 589 aa12.99□□□□□ -0.33
CCDC42-202ENST00000539522 ARFGAP3Q9NP61 516 aa12.99□□□□□ -0.33
CCDC42-202ENST00000539522 EIF2B3Q9NR50 452 aaKnown RBP12.99□□□□□ -0.33
CCDC42-202ENST00000539522 WHRNQ9P202 907 aa12.99□□□□□ -0.33
CCDC42-202ENST00000539522 SNX24Q9Y343 169 aa12.99□□□□□ -0.33
CCDC42-202ENST00000539522 C1orf232A0A0U1RR37 186 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 NEMP1O14524 444 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 DNALI1O14645 258 aaPredicted RBP12.98□□□□□ -0.33
CCDC42-202ENST00000539522 AVILO75366 819 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 TM7SF2O76062 418 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 RHOBTB1O94844 696 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 ELFN1P0C7U0 828 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 TPSB2P20231 275 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 CA4P22748 312 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 XPAP23025 273 aaPredicted RBP12.98□□□□□ -0.33
CCDC42-202ENST00000539522 MAGEA3P43357 314 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 RPL21P46778 160 aaKnown RBP12.98□□□□□ -0.33
CCDC42-202ENST00000539522 CARSP49589 748 aaKnown RBP12.98□□□□□ -0.33
CCDC42-202ENST00000539522 EPHB1P54762 984 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 BASP1P80723 227 aaKnown RBP12.98□□□□□ -0.33
CCDC42-202ENST00000539522 CAV1Q03135 178 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 PRPSAP1Q14558 356 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 IRF4Q15306 451 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 TPSAB1Q15661 275 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 LAIR1Q6GTX8 287 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 TCEAL6Q6IPX3 200 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 SLC22A18ASQ8N1D0 253 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 ZCCHC9Q8N567 271 aaKnown RBP12.98□□□□□ -0.33
CCDC42-202ENST00000539522 GPR26Q8NDV2 337 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 SNX19Q92543 992 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 FOXJ1Q92949 421 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 SCAMP4Q969E2 229 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 TCEAL3Q969E4 200 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 DTD2Q96FN9 168 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 LOXL4Q96JB6 756 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 ZNF778Q96MU6 729 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 PWWP2AQ96N64 755 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 WDR83Q9BRX9 315 aaKnown RBP12.98□□□□□ -0.33
CCDC42-202ENST00000539522 TRIM56Q9BRZ2 755 aaKnown RBP12.98□□□□□ -0.33
CCDC42-202ENST00000539522 FSD1LQ9BXM9 530 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 TRIM31Q9BZY9 425 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 ABCG8Q9H221 673 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 SEMA4AQ9H3S1 761 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 GRHL1Q9NZI5 618 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 IL17CQ9P0M4 197 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 ASIC3Q9UHC3 531 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 CD84Q9UIB8 345 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 TMPRSS11EQ9UL52 423 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 ARL5AQ9Y689 179 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 PI4KAP42356 2102 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 RALGAPA1Q6GYQ0 2036 aa12.98□□□□□ -0.33
CCDC42-202ENST00000539522 ESYT3A0FGR9 886 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 ERI2A8K979 691 aaKnown RBP12.97□□□□□ -0.33
CCDC42-202ENST00000539522 MEI4A8MW99 385 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 PSMD11O00231 422 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 GPR39O43194 453 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 CYP2A6P11509 494 aaPredicted RBP12.97□□□□□ -0.33
CCDC42-202ENST00000539522 BPIP17213 487 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 PSMA3P25788 255 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 SPINT3P49223 89 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 ZNF140P52738 457 aaPredicted RBP12.97□□□□□ -0.33
CCDC42-202ENST00000539522 PFN3P60673 137 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 CCDC15Q0P6D6 951 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 CALCOCO2Q13137 446 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 HLTFQ14527 1009 aaKnown RBP eCLIP12.97□□□□□ -0.33
CCDC42-202ENST00000539522 MSS51Q4VC12 460 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 DENND2CQ68D51 928 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 FBXO38Q6PIJ6 1188 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 CYP2U1Q7Z449 544 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 ABI3BPQ7Z7G0 1075 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 PCGF5Q86SE9 256 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 SPATS2Q86XZ4 545 aaKnown RBP12.97□□□□□ -0.33
CCDC42-202ENST00000539522 SYT12Q8IV01 421 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 MPP5Q8N3R9 675 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 BLOC1S5Q8TDH9 187 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 PIGKQ92643 395 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 SNF8Q96H20 258 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 SERAC1Q96JX3 654 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 PPP1R2P1Q96PQ5 205 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 IRF2BPLQ9H1B7 796 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 DPH5Q9H2P9 285 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 ZFYVE1Q9HBF4 777 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 PLAC1Q9HBJ0 212 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 CAPN10Q9HC96 672 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 BPIFA1Q9NP55 256 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 RXFP3Q9NSD7 469 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 CNOT6Q9ULM6 557 aaKnown RBP12.97□□□□□ -0.33
CCDC42-202ENST00000539522 NFU1Q9UMS0 254 aa12.97□□□□□ -0.33
CCDC42-202ENST00000539522 ZFHX2Q9C0A1 2572 aaPredicted RBP12.97□□□□□ -0.33
CCDC42-202ENST00000539522 CACNA1EQ15878 2313 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms