RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 A0A0D9SEW6 157 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 AP3B1O00203 1094 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 COPEO14579 308 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 ANXA9O76027 345 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 HLA-DQB2P05538 268 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 ERVK-10P10266 1014 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 MAOBP27338 520 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 CCNFP41002 786 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 ST8SIA6P61647 398 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 MGAT5Q09328 741 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 CDH17Q12864 832 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 C5orf22Q49AR2 442 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 RNF219Q5W0B1 726 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-208ENST00000537004 CGB2Q6NT52 195 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 CCDC121Q6ZUS5 278 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 SPATA21Q7Z572 469 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 TMEM135Q86UB9 458 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 ZNF557Q8N988 423 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-208ENST00000537004 KNL1Q8NG31 2342 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 ZNF669Q96BR6 464 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-208ENST00000537004 HSPA12BQ96MM6 686 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 FCRL3Q96P31 734 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-208ENST00000537004 SRPK1Q96SB4 655 aaKnown RBP11.99□□□□□ -0.49
CLIP1-208ENST00000537004 IL22Q9GZX6 179 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 ITM2CQ9NQX7 267 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 RBM22Q9NW64 420 aaKnown RBP eCLIP11.99□□□□□ -0.49
CLIP1-208ENST00000537004 IL1RAPL1Q9NZN1 696 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 ZFATQ9P243 1243 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 USP36Q9P275 1121 aaKnown RBP11.99□□□□□ -0.49
CLIP1-208ENST00000537004 OR51B4Q9Y5P0 310 aa11.99□□□□□ -0.49
CLIP1-208ENST00000537004 WDFY3Q8IZQ1 3526 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 ATP9BO43861 1147 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 SNAP91O60641 907 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 CLDN11O75508 207 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 NEBLO76041 1014 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 USP1O94782 785 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 MT-CYBP00156 380 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-208ENST00000537004 MT-CO1P00395 513 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 ACADMP11310 421 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 TPH1P17752 444 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 ETV4P43268 484 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 CDH4P55283 916 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 HNRNPA1L2Q32P51 320 aaKnown RBP11.98□□□□□ -0.49
CLIP1-208ENST00000537004 TTC31Q49AM3 519 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-208ENST00000537004 AASDHQ4L235 1098 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-208ENST00000537004 C9orf64Q5T6V5 341 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 ACBD5Q5T8D3 534 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-208ENST00000537004 ZNF449Q6P9G9 518 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 PACS1Q6VY07 963 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 C11orf74Q86VG3 221 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.98□□□□□ -0.49
CLIP1-208ENST00000537004 ZNF75CPQ92670 426 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-208ENST00000537004 GRAMD1AQ96CP6 724 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 HMCESQ96FZ2 354 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 PPP1R2P1Q96PQ5 205 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 FAM111AQ96PZ2 611 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 TBL1YQ9BQ87 522 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 GPR174Q9BXC1 333 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 IQCGQ9H095 443 aaKnown RBP11.98□□□□□ -0.49
CLIP1-208ENST00000537004 VPS11Q9H270 941 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 VPS45Q9NRW7 570 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 WSB2Q9NYS7 404 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-208ENST00000537004 VPS28Q9UK41 221 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 TBC1D30Q9Y2I9 924 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 PSAT1Q9Y617 370 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 BPTFQ12830 3046 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 ZCWPW2A0A1B0GU75 182 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 FAM237BA0A1B0GVD1 139 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 MAGEB16A2A368 324 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 WDR91A4D1P6 747 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 DRGXA6NNA5 263 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 ASLP04424 464 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 DHRS4L1P0CG22 281 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 GLDCP23378 1020 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 CD6P30203 668 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 ACSL1P33121 698 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 GEMP55040 296 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 RPS14P62263 151 aaKnown RBP11.98□□□□□ -0.49
CLIP1-208ENST00000537004 IRX4P78413 519 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 FRG1Q14331 258 aaKnown RBP11.98□□□□□ -0.49
CLIP1-208ENST00000537004 SMAD1Q15797 465 aaKnown RBP11.98□□□□□ -0.49
CLIP1-208ENST00000537004 ANKRD20A4Q4UJ75 823 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 LYSMD4Q5XG99 296 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 IPMKQ8NFU5 416 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 MUC3BQ9H195 1237 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 SLCO1B3Q9NPD5 702 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 MKS1Q9NXB0 559 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 DLL3Q9NYJ7 618 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 ZNF212Q9UDV6 495 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 SERGEFQ9UGK8 458 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 SOX13Q9UN79 622 aa11.98□□□□□ -0.49
CLIP1-208ENST00000537004 RALGAPA1Q6GYQ0 2036 aa11.97□□□□□ -0.49
CLIP1-208ENST00000537004 MUC22E2RYF6 1773 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-208ENST00000537004 LNP1A1A4G5 178 aa11.97□□□□□ -0.49
CLIP1-208ENST00000537004 DCDC2BA2VCK2 349 aa11.97□□□□□ -0.49
CLIP1-208ENST00000537004 CCT8L1PA6NM43 557 aa11.97□□□□□ -0.49
CLIP1-208ENST00000537004 K7ERQ8 282 aa11.97□□□□□ -0.49
CLIP1-208ENST00000537004 NDUFS2O75306 463 aa11.97□□□□□ -0.49
CLIP1-208ENST00000537004 PEX11BO96011 259 aa11.97□□□□□ -0.49
CLIP1-208ENST00000537004 OR1E1P30953 314 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms