RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 IL31Q6EBC2 164 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 CYHR1Q6ZMK1 362 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 RAB44Q7Z6P3 723 aaPredicted RBP13.15□□□□□ -0.3
LDLR-203ENST00000535915 CLYBLQ8N0X4 340 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 GALNT4Q8N4A0 578 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 MARVELD2Q8N4S9 558 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 ATP6V1E2Q96A05 226 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 C3orf30Q96M34 536 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 GPR62Q9BZJ7 368 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 RAB26Q9ULW5 256 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 AP4B1Q9Y6B7 739 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 CASP8AP2Q9UKL3 1982 aa13.15□□□□□ -0.3
LDLR-203ENST00000535915 F5H5T6 163 aa13.15□□□□□ -0.31
LDLR-203ENST00000535915 UBXN8O00124 270 aa13.15□□□□□ -0.31
LDLR-203ENST00000535915 NRP2O60462 931 aa13.15□□□□□ -0.31
LDLR-203ENST00000535915 TLR5O60602 858 aa13.15□□□□□ -0.31
LDLR-203ENST00000535915 RNASEH2AO75792 299 aaKnown RBP13.15□□□□□ -0.31
LDLR-203ENST00000535915 ZNF37AP17032 561 aaPredicted RBP13.15□□□□□ -0.31
LDLR-203ENST00000535915 TACR2P21452 398 aa13.15□□□□□ -0.31
LDLR-203ENST00000535915 SH3BP2P78314 561 aa13.15□□□□□ -0.31
LDLR-203ENST00000535915 TIAL1Q01085 375 aaKnown RBP eCLIP13.15□□□□□ -0.31
LDLR-203ENST00000535915 PFKFB4Q16877 469 aa13.15□□□□□ -0.31
LDLR-203ENST00000535915 KIF19Q2TAC6 998 aa13.15□□□□□ -0.31
LDLR-203ENST00000535915 LGI2Q8N0V4 545 aa13.15□□□□□ -0.31
LDLR-203ENST00000535915 GPR150Q8NGU9 434 aa13.15□□□□□ -0.31
LDLR-203ENST00000535915 PEX13Q92968 403 aa13.15□□□□□ -0.31
LDLR-203ENST00000535915 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.15□□□□□ -0.313e-6■□□□□ 10.6
LDLR-203ENST00000535915 CRISPLD1Q9H336 500 aa13.15□□□□□ -0.31
LDLR-203ENST00000535915 MID1IP1Q9NPA3 183 aa13.15□□□□□ -0.31
LDLR-203ENST00000535915 ACTL7AQ9Y615 435 aa13.15□□□□□ -0.31
LDLR-203ENST00000535915 A0A0D9SEW6 157 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 UBA6A0AVT1 1052 aaPredicted RBP13.14□□□□□ -0.31
LDLR-203ENST00000535915 MTMR11A4FU01 709 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 OR6C75A6NL08 312 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 TRIM24O15164 1050 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 SRP72O76094 671 aaKnown RBP13.14□□□□□ -0.31
LDLR-203ENST00000535915 EPOP01588 193 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 HOXB8P17481 243 aaPredicted RBP13.14□□□□□ -0.31
LDLR-203ENST00000535915 GRIA2P42262 883 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 PSMD8P48556 350 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 KCNQ1P51787 676 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 ACLYP53396 1101 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 RING1Q06587 406 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 OR4D1Q15615 310 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 TICAM1Q8IUC6 712 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 ABI1Q8IZP0 508 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 GIPC2Q8TF65 315 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 CNBD2Q96M20 576 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 SPATA16Q9BXB7 569 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 NMRK2Q9NPI5 230 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 CROTQ9UKG9 612 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 SARDHQ9UL12 918 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 PRORSD1PA6NEY8 169 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 LRRC14BA6NHZ5 514 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 PPP6CO00743 305 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 PRSS56P0CW18 603 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 GFAPP14136 432 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 STC1P52823 247 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 FAM189BP81408 668 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 MRPL58Q14197 206 aaKnown RBP13.14□□□□□ -0.31
LDLR-203ENST00000535915 CNPY1Q3B7I2 92 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 UGT3A2Q3SY77 523 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 ACBD5Q5T8D3 534 aaPredicted RBP13.14□□□□□ -0.31
LDLR-203ENST00000535915 ISLR2Q6UXK2 745 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 RNF19BQ6ZMZ0 732 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 RNF180Q86T96 592 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 TMEM102Q8N9M5 508 aaPredicted RBP13.14□□□□□ -0.31
LDLR-203ENST00000535915 LPGAT1Q92604 370 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 ASB2Q96Q27 587 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 ZIC5Q96T25 663 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 AKTIPQ9H8T0 292 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 PDFQ9HBH1 243 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 AP4S1Q9Y587 144 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 DNAJC15Q9Y5T4 150 aa13.14□□□□□ -0.31
LDLR-203ENST00000535915 CDK14O94921 469 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 ALDOCP09972 364 aaKnown RBP13.13□□□□□ -0.31
LDLR-203ENST00000535915 OGNP20774 298 aaKnown RBP13.13□□□□□ -0.31
LDLR-203ENST00000535915 GSTT1P30711 240 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 NME5P56597 212 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 ILF2Q12905 390 aaKnown RBP13.13□□□□□ -0.31
LDLR-203ENST00000535915 DYNC1I2Q13409 638 aaKnown RBP13.13□□□□□ -0.31
LDLR-203ENST00000535915 TRAF7Q6Q0C0 670 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 BBS5Q8N3I7 341 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 EME1Q96AY2 570 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 CDKN2AIPNLQ96HQ2 116 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 POPDC3Q9HBV1 291 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 UBAP1Q9NZ09 502 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 FAM50BQ9Y247 325 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 TBC1D30Q9Y2I9 924 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 PTGDR2Q9Y5Y4 395 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 THSD7BQ9C0I4 1608 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 FAM155AB1AL88 458 aaPredicted RBP13.13□□□□□ -0.31
LDLR-203ENST00000535915 H3BMM5 538 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 AP1G1O43747 822 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 PGM3O95394 542 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 NDST3O95803 873 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 ACADVLP49748 655 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 RHDQ02161 417 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 DUSP4Q13115 394 aa13.13□□□□□ -0.31
LDLR-203ENST00000535915 BTG3Q14201 252 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms