RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 GRIA3P42263 894 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 MGAT3Q09327 533 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 OR2T34Q8NGX1 318 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 OR2T3Q8NH03 318 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 ARRDC2Q8TBH0 407 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 TADA1Q96BN2 335 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 PPWD1Q96BP3 646 aaKnown RBP19.26■□□□□ 0.67
VPS28-213ENST00000530983 ZNF512Q96ME7 567 aaPredicted RBP19.26■□□□□ 0.67
VPS28-213ENST00000530983 EFHD1Q9BUP0 239 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 NME4O00746 187 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 GPR182O15218 404 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 CDK14O94921 469 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 SIX3O95343 332 aaPredicted RBP19.25■□□□□ 0.67
VPS28-213ENST00000530983 H6PDO95479 791 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 RHOQP17081 205 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 NME5P56597 212 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 TUSC3Q13454 348 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 MS4A13Q5J8X5 152 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 IRAK1BP1Q5VVH5 260 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 SCN4BQ8IWT1 228 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 NUP93Q8N1F7 819 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 TEX26Q8N6G2 289 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 GRIN3AQ8TCU5 1115 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 TBATAQ96M53 351 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 ZYG11BQ9C0D3 744 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 SP110Q9HB58 689 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 OLAHQ9NV23 265 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 ARMC1Q9NVT9 282 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 TMEM248Q9NWD8 314 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 DUS2Q9NX74 493 aaKnown RBP19.25■□□□□ 0.67
VPS28-213ENST00000530983 PADI3Q9ULW8 664 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 LRRC14BA6NHZ5 514 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 BBIP1A8MTZ0 92 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 GJB3O75712 270 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 ZNF23P17027 643 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 CD52P31358 61 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 FOXA1P55317 472 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 KIF19Q2TAC6 998 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 SDHAF4Q5VUM1 108 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 PTGR2Q8N8N7 351 aaPredicted RBP19.25■□□□□ 0.67
VPS28-213ENST00000530983 ANKFN1Q8N957 763 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 PCYOX1LQ8NBM8 494 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 SUSD3Q96L08 255 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 ABCD2Q9UBJ2 740 aa19.25■□□□□ 0.67
VPS28-213ENST00000530983 LOC285095A0A1B0GVY8 99 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 FAM155AB1AL88 458 aaPredicted RBP19.24■□□□□ 0.67
VPS28-213ENST00000530983 H3BNH8 94 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 PLOD2O00469 737 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 NR5A2O00482 541 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 SOCS2O14508 198 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 HSPA8P11142 646 aaKnown RBP19.24■□□□□ 0.67
VPS28-213ENST00000530983 SLC2A3P11169 496 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 BMP2P12643 396 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 CACNB2Q08289 660 aaPredicted RBP19.24■□□□□ 0.67
VPS28-213ENST00000530983 OR4D1Q15615 310 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 NHSL2Q5HYW2 709 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 CXCL17Q6UXB2 119 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 ZBTB49Q6ZSB9 765 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 PHYKPLQ8IUZ5 450 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 RYBPQ8N488 228 aaPredicted RBP19.24■□□□□ 0.67
VPS28-213ENST00000530983 PLEKHG4BQ96PX9 1271 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 CCT7Q99832 543 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 HAUS8Q9BT25 410 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 ANKRD60Q9BZ19 345 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 UPF3AQ9H1J1 476 aaKnown RBP19.24■□□□□ 0.67
VPS28-213ENST00000530983 IL1RL2Q9HB29 575 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 PLXNA3P51805 1871 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 PIP5K1BO14986 540 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 FGF4P08620 206 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 MTHFD2P13995 350 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 CAPN3P20807 821 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 PRKCQQ04759 706 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 ACVR1Q04771 509 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 GRB7Q14451 532 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 SEMA3AQ14563 771 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 PTPRCAPQ14761 206 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 MAP7D1Q3KQU3 841 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 SLC39A12Q504Y0 691 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 IL31Q6EBC2 164 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 PPP4R4Q6NUP7 873 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 ERMP1Q7Z2K6 904 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 SERINC5Q86VE9 423 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 TWIST2Q8WVJ9 160 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 NSUN5Q96P11 429 aaKnown RBP19.24■□□□□ 0.67
VPS28-213ENST00000530983 MID1IP1Q9NPA3 183 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 PNPLA3Q9NST1 481 aa19.24■□□□□ 0.67
VPS28-213ENST00000530983 UBXN8O00124 270 aa19.23■□□□□ 0.67
VPS28-213ENST00000530983 AKAP10O43572 662 aa19.23■□□□□ 0.67
VPS28-213ENST00000530983 GOT2P00505 430 aaKnown RBP19.23■□□□□ 0.67
VPS28-213ENST00000530983 ZNF37AP17032 561 aaPredicted RBP19.23■□□□□ 0.67
VPS28-213ENST00000530983 YBX1P67809 324 aaKnown RBP19.23■□□□□ 0.67
VPS28-213ENST00000530983 YWHAHQ04917 246 aaPredicted RBP19.23■□□□□ 0.67
VPS28-213ENST00000530983 TNK2Q07912 1038 aa19.23■□□□□ 0.67
VPS28-213ENST00000530983 VPS26BQ4G0F5 336 aa19.23■□□□□ 0.67
VPS28-213ENST00000530983 ZNF354CQ86Y25 554 aa19.23■□□□□ 0.67
VPS28-213ENST00000530983 TUBB1Q9H4B7 451 aa19.23■□□□□ 0.67
VPS28-213ENST00000530983 CAAP1Q9H8G2 361 aa19.23■□□□□ 0.67
VPS28-213ENST00000530983 MYRFQ9Y2G1 1151 aa19.23■□□□□ 0.67
VPS28-213ENST00000530983 ARL5AQ9Y689 179 aa19.23■□□□□ 0.67
VPS28-213ENST00000530983 A0A0U1RQF3 1178 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms