RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 OR52K2Q8NGK3 314 aa15.33■□□□□ 0.05
USH1C-207ENST00000527720 SPDL1Q96EA4 605 aa15.33■□□□□ 0.05
USH1C-207ENST00000527720 PRICKLE1Q96MT3 831 aaPredicted RBP15.33■□□□□ 0.05
USH1C-207ENST00000527720 SPON2Q9BUD6 331 aa15.33■□□□□ 0.05
USH1C-207ENST00000527720 TDRD1Q9BXT4 1180 aaKnown RBP15.33■□□□□ 0.05
USH1C-207ENST00000527720 DERL2Q9GZP9 239 aa15.33■□□□□ 0.05
USH1C-207ENST00000527720 SCUBE2Q9NQ36 999 aa15.33■□□□□ 0.05
USH1C-207ENST00000527720 SPATS2LQ9NUQ6 558 aaKnown RBP15.33■□□□□ 0.05
USH1C-207ENST00000527720 AFF4Q9UHB7 1163 aaKnown RBP15.33■□□□□ 0.05
USH1C-207ENST00000527720 SARDHQ9UL12 918 aa15.33■□□□□ 0.05
USH1C-207ENST00000527720 TBC1D30Q9Y2I9 924 aa15.33■□□□□ 0.05
USH1C-207ENST00000527720 PLXNA4Q9HCM2 1894 aa15.33■□□□□ 0.04
USH1C-207ENST00000527720 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.33■□□□□ 0.04
USH1C-207ENST00000527720 UBFD1O14562 309 aaKnown RBP15.33■□□□□ 0.04
USH1C-207ENST00000527720 COCHO43405 550 aa15.33■□□□□ 0.04
USH1C-207ENST00000527720 BCAS2O75934 225 aaPredicted RBP15.33■□□□□ 0.04
USH1C-207ENST00000527720 RPS24P62847 133 aaKnown RBP15.33■□□□□ 0.04
USH1C-207ENST00000527720 FASTKQ14296 549 aaKnown RBP15.33■□□□□ 0.04
USH1C-207ENST00000527720 PTPRCAPQ14761 206 aa15.33■□□□□ 0.04
USH1C-207ENST00000527720 LARP4Q71RC2 724 aaKnown RBP eCLIP15.33■□□□□ 0.04
USH1C-207ENST00000527720 GLT6D1Q7Z4J2 308 aa15.33■□□□□ 0.04
USH1C-207ENST00000527720 PQLC1Q8N2U9 271 aa15.33■□□□□ 0.04
USH1C-207ENST00000527720 RMDN1Q96DB5 314 aa15.33■□□□□ 0.04
USH1C-207ENST00000527720 MYRFLQ96LU7 910 aa15.33■□□□□ 0.04
USH1C-207ENST00000527720 ATOH8Q96SQ7 321 aa15.33■□□□□ 0.04
USH1C-207ENST00000527720 DDX50Q9BQ39 737 aaKnown RBP15.33■□□□□ 0.04
USH1C-207ENST00000527720 TAS2R13Q9NYV9 303 aa15.33■□□□□ 0.04
USH1C-207ENST00000527720 TRPM5Q9NZQ8 1165 aa15.33■□□□□ 0.04
USH1C-207ENST00000527720 DLGAP2Q9P1A6 1054 aa15.33■□□□□ 0.04
USH1C-207ENST00000527720 CCDC189A1A4V9 331 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 TRIM38O00635 465 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 CFLARO15519 480 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 ADAM12O43184 909 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 STC2O76061 302 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 XRCC1P18887 633 aaPredicted RBP15.32■□□□□ 0.04
USH1C-207ENST00000527720 CD9P21926 228 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 OR1D2P34982 312 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 ALDH7A1P49419 539 aaKnown RBP15.32■□□□□ 0.04
USH1C-207ENST00000527720 ACADVLP49748 655 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 SCNN1BP51168 640 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 ATP6V0D1P61421 351 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 TRIP10Q15642 601 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 ADGRF1Q5T601 910 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 OGFRL1Q5TC84 451 aaPredicted RBP15.32■□□□□ 0.04
USH1C-207ENST00000527720 ZNF783Q6ZMS7 281 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 GK5Q6ZS86 529 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 RNF168Q8IYW5 571 aaPredicted RBP15.32■□□□□ 0.04
USH1C-207ENST00000527720 PTGR2Q8N8N7 351 aaPredicted RBP15.32■□□□□ 0.04
USH1C-207ENST00000527720 SH3RF2Q8TEC5 729 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 LPGAT1Q92604 370 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 KIAA1191Q96A73 305 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 NPAS2Q99743 824 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 SLC25A23Q9BV35 468 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 CCDC68Q9H2F9 335 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 PFDN6O15212 129 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 KERAO60938 352 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 LINGO3P0C6S8 592 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 PIRTP0C851 137 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 HMGA1P17096 107 aaKnown RBP15.32■□□□□ 0.04
USH1C-207ENST00000527720 CORO1AP31146 461 aaKnown RBP15.32■□□□□ 0.04
USH1C-207ENST00000527720 DPP6P42658 865 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 RGRP47804 291 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 IRX1P78414 480 aaPredicted RBP15.32■□□□□ 0.04
USH1C-207ENST00000527720 TCTN1Q2MV58 587 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 UGT3A2Q3SY77 523 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 LPCAT4Q643R3 524 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 HACD2Q6Y1H2 254 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 RPS27LQ71UM5 84 aaKnown RBP15.32■□□□□ 0.04
USH1C-207ENST00000527720 HMGCLL1Q8TB92 370 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 STAG3L4Q8TBR4 150 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 TOP1MTQ969P6 601 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 C19orf60Q96EN9 201 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 BTBD9Q96Q07 612 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 UNC93B1Q9H1C4 597 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 PDP2Q9P2J9 529 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 AGO1Q9UL18 857 aaKnown RBP15.32■□□□□ 0.04
USH1C-207ENST00000527720 SPO11Q9Y5K1 396 aa15.32■□□□□ 0.04
USH1C-207ENST00000527720 LCHNA4D1U4 455 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 EIF4E1BA6NMX2 242 aaKnown RBP15.31■□□□□ 0.04
USH1C-207ENST00000527720 RHOBTB1O94844 696 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 PARNO95453 639 aaKnown RBP15.31■□□□□ 0.04
USH1C-207ENST00000527720 PRLP01236 227 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 KLKB1P03952 638 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 SNRPB2P08579 225 aaKnown RBP15.31■□□□□ 0.04
USH1C-207ENST00000527720 MTHFD2P13995 350 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 UQCRBP14927 111 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 PEX2P28328 305 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 PPP3CCP48454 512 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 LRP8Q14114 963 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 CYTH1Q15438 398 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 OR4D1Q15615 310 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 MMEL1Q495T6 779 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 CATSPER1Q8NEC5 780 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 OR4K2Q8NGD2 314 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 TMA16Q96EY4 203 aaKnown RBP15.31■□□□□ 0.04
USH1C-207ENST00000527720 TRMT2BQ96GJ1 504 aaKnown RBP15.31■□□□□ 0.04
USH1C-207ENST00000527720 CAPNS2Q96L46 248 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 ADGRE3Q9BY15 652 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 CACNA2D2Q9NY47 1150 aa15.31■□□□□ 0.04
USH1C-207ENST00000527720 SUCOQ9UBS9 1254 aaKnown RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms