RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 NDST3O95803 873 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 HSPA8P11142 646 aaKnown RBP21.22■□□□□ 0.99
VPS28-205ENST00000526204 TACR2P21452 398 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 CCND3P30281 292 aaPredicted RBP21.22■□□□□ 0.99
VPS28-205ENST00000526204 GRIA2P42262 883 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 TYSND1Q2T9J0 566 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 RYBPQ8N488 228 aaPredicted RBP21.22■□□□□ 0.99
VPS28-205ENST00000526204 LPGAT1Q92604 370 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 PDFQ9HBH1 243 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 SYTL2Q9HCH5 934 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 PLK2Q9NYY3 685 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 DNAJC15Q9Y5T4 150 aa21.22■□□□□ 0.99
VPS28-205ENST00000526204 ATP6AP2A0A1C7CYW4 349 aa21.21■□□□□ 0.99
VPS28-205ENST00000526204 ATP6AP2O75787 350 aa21.21■□□□□ 0.99
VPS28-205ENST00000526204 CDK14O94921 469 aa21.21■□□□□ 0.99
VPS28-205ENST00000526204 ARSAP15289 507 aa21.21■□□□□ 0.99
VPS28-205ENST00000526204 TSPAN8P19075 237 aa21.21■□□□□ 0.99
VPS28-205ENST00000526204 GPX3P22352 226 aa21.21■□□□□ 0.99
VPS28-205ENST00000526204 SH3BGRP55822 239 aaPredicted RBP21.21■□□□□ 0.99
VPS28-205ENST00000526204 GALNT3Q14435 633 aa21.21■□□□□ 0.99
VPS28-205ENST00000526204 FAM171A1Q5VUB5 890 aa21.21■□□□□ 0.99
VPS28-205ENST00000526204 PBXIP1Q96AQ6 731 aa21.21■□□□□ 0.99
VPS28-205ENST00000526204 EME1Q96AY2 570 aa21.21■□□□□ 0.99
VPS28-205ENST00000526204 EFHD1Q9BUP0 239 aa21.21■□□□□ 0.99
VPS28-205ENST00000526204 PCDHAC1Q9H158 963 aa21.21■□□□□ 0.99
VPS28-205ENST00000526204 MAGEH1Q9H213 219 aa21.21■□□□□ 0.99
VPS28-205ENST00000526204 AKTIPQ9H8T0 292 aa21.21■□□□□ 0.99
VPS28-205ENST00000526204 UBAP1Q9NZ09 502 aa21.21■□□□□ 0.99
VPS28-205ENST00000526204 COMMD3-BMI1R4GMX3 469 aa21.21■□□□□ 0.99
VPS28-205ENST00000526204 TCRBV3S1A0A5B6 114 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 F5H5T6 163 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 HDCP19113 662 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 SLC7A1P30825 629 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 CDH13P55290 713 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 SMARCB1Q12824 385 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 IRAK1BP1Q5VVH5 260 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 NADSYN1Q6IA69 706 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 OR13C4Q8NGS5 318 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 SH3RF2Q8TEC5 729 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 LINC01599Q8WXQ3 324 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 C3orf30Q96M34 536 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 MID1IP1Q9NPA3 183 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 EME2A4GXA9 379 aaPredicted RBP21.2■□□□□ 0.98
VPS28-205ENST00000526204 AZIN1O14977 448 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 GJB3O75712 270 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 SOAT2O75908 522 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 COL6A1P12109 1028 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 MTHFD2P13995 350 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 RPL5P46777 297 aaKnown RBP21.2■□□□□ 0.98
VPS28-205ENST00000526204 SEMA3AQ14563 771 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 OR4D1Q15615 310 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 PFKFB4Q16877 469 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 GEN1Q17RS7 908 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 MAP7D1Q3KQU3 841 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 MGAT5BQ3V5L5 792 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 C5orf22Q49AR2 442 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 GALNT4Q8N4A0 578 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 STAG3L4Q8TBR4 150 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 EXT2Q93063 718 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 CDKN2AIPNLQ96HQ2 116 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 ZFRQ96KR1 1074 aaKnown RBP21.2■□□□□ 0.98
VPS28-205ENST00000526204 ATOH8Q96SQ7 321 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 MGME1Q9BQP7 344 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 ZNF696Q9H7X3 374 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 FBRSL1Q9HCM7 1045 aaKnown RBP21.2■□□□□ 0.98
VPS28-205ENST00000526204 NLE1Q9NVX2 485 aaPredicted RBP21.2■□□□□ 0.98
VPS28-205ENST00000526204 SEPT3Q9UH03 358 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 SLC27A5Q9Y2P5 690 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 NDUFAF1Q9Y375 327 aa21.2■□□□□ 0.98
VPS28-205ENST00000526204 CLPTM1O96005 669 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 ALDOCP09972 364 aaKnown RBP21.19■□□□□ 0.98
VPS28-205ENST00000526204 SMIM18P0DKX4 95 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 ARPP19P56211 112 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 NAA20P61599 178 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 PRKCZQ05513 592 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 RALGDSQ12967 914 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 GPR17Q13304 367 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 PTPRCAPQ14761 206 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 KIF19Q2TAC6 998 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 KANK2Q63ZY3 851 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 PRMT9Q6P2P2 845 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 RNF180Q86T96 592 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 FUNDC1Q8IVP5 155 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 LGI2Q8N0V4 545 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 OR9I1Q8NGQ6 314 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 TWIST2Q8WVJ9 160 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 KIAA1191Q96A73 305 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 CNBD2Q96M20 576 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 TRIB3Q96RU7 358 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 TCF12Q99081 682 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 SEPT5Q99719 369 aaPredicted RBP21.19■□□□□ 0.98
VPS28-205ENST00000526204 HOPXQ9BPY8 73 aaPredicted RBP21.19■□□□□ 0.98
VPS28-205ENST00000526204 VCX3AQ9NNX9 186 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 MTMR11A4FU01 709 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 UBXN8O00124 270 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 TLR5O60602 858 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 KERAO60938 352 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 VPS4BO75351 444 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 MT-CO1P00395 513 aa21.19■□□□□ 0.98
VPS28-205ENST00000526204 ZDHHC11BP0C7U3 371 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms