RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ASAP2O43150 1006 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 SYNCRIPO60506 623 aaKnown RBP4.89□□□□□ -1.63
CD44-220ENST00000525688 SEC14L2O76054 403 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 RNF8O76064 485 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 DDAH2O95865 285 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 ADAP00813 363 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 LCKP06239 509 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 TBXAS1P24557 533 aaPredicted RBP4.89□□□□□ -1.63
CD44-220ENST00000525688 HOXD10P28358 340 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 CHRNA5P30532 468 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 ARL3P36405 182 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 CPOXP36551 454 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 ACVRL1P37023 503 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 PTPN9P43378 593 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 ZNF41P51814 821 aaPredicted RBP4.89□□□□□ -1.63
CD44-220ENST00000525688 TKTL1P51854 596 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 PPP5CP53041 499 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 RPS3AP61247 264 aaKnown RBP4.89□□□□□ -1.63
CD44-220ENST00000525688 DPTQ07507 201 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 C17orf67Q0P5P2 114 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 DCTN2Q13561 401 aaKnown RBP4.89□□□□□ -1.63
CD44-220ENST00000525688 OASLQ15646 514 aaKnown RBP4.89□□□□□ -1.63
CD44-220ENST00000525688 TMEM268Q5VZI3 342 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 RUFY3Q7L099 469 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 PRSS45Q7RTY3 260 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 PIWIL3Q7Z3Z3 882 aaKnown RBP4.89□□□□□ -1.63
CD44-220ENST00000525688 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.89□□□□□ -1.63
CD44-220ENST00000525688 GHDCQ8N2G8 530 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 C8orf58Q8NAV2 365 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 FAM98AQ8NCA5 519 aaKnown RBP4.89□□□□□ -1.63
CD44-220ENST00000525688 ZBTB44Q8NCP5 570 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 MNS1Q8NEH6 495 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.89□□□□□ -1.63
CD44-220ENST00000525688 KRT35Q92764 455 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 RUNDC3BQ96NL0 473 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 EFHD1Q9BUP0 239 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 TNMDQ9H2S6 317 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 SUDS3Q9H7L9 328 aaPredicted RBP4.89□□□□□ -1.63
CD44-220ENST00000525688 DECR2Q9NUI1 292 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 UTP6Q9NYH9 597 aaKnown RBP4.89□□□□□ -1.63
CD44-220ENST00000525688 UBA2Q9UBT2 640 aaPredicted RBP4.89□□□□□ -1.63
CD44-220ENST00000525688 ZNF215Q9UL58 517 aaPredicted RBP4.89□□□□□ -1.63
CD44-220ENST00000525688 C2CD2Q9Y426 696 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 KIF3AQ9Y496 699 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 NCANO14594 1321 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 CENPJQ9HC77 1338 aaPredicted RBP4.89□□□□□ -1.63
CD44-220ENST00000525688 SHPRHQ149N8 1683 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 PNPLA6Q8IY17 1366 aa4.89□□□□□ -1.63
CD44-220ENST00000525688 ATP7BP35670 1465 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 LRP6O75581 1613 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 TEX13CA0A0J9YWL9 993 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.88□□□□□ -1.63
CD44-220ENST00000525688 SLC22A23A1A5C7 686 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 TAF4O00268 1085 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 PSMA7O14818 248 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 MSI1O43347 362 aaKnown RBP4.88□□□□□ -1.63
CD44-220ENST00000525688 ZBTB14O43829 449 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 PRPSAP2O60256 369 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 KERAO60938 352 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 PPFIA2O75334 1257 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 PALMO75781 387 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 GZMAP12544 262 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 CD72P21854 359 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 PBLDP30039 288 aaPredicted RBP4.88□□□□□ -1.63
CD44-220ENST00000525688 HOXA11P31270 313 aaPredicted RBP4.88□□□□□ -1.63
CD44-220ENST00000525688 ICAM3P32942 547 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 TCF7P36402 384 aaPredicted RBP4.88□□□□□ -1.63
CD44-220ENST00000525688 THPOP40225 353 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 CYP2J2P51589 502 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 GPC3P51654 580 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 RARSP54136 660 aaKnown RBP4.88□□□□□ -1.63
CD44-220ENST00000525688 INHBCP55103 352 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 SLC26A5P58743 744 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 CYP4A11Q02928 519 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 COL10A1Q03692 680 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 ACTN3Q08043 901 aaPredicted RBP4.88□□□□□ -1.63
CD44-220ENST00000525688 AIMP1Q12904 312 aaKnown RBP4.88□□□□□ -1.63
CD44-220ENST00000525688 C2orf76Q3KRA6 126 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 EARS2Q5JPH6 523 aaKnown RBP4.88□□□□□ -1.63
CD44-220ENST00000525688 IL20RBQ6UXL0 311 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 TMEM110Q86TL2 294 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 TAGAPQ8N103 731 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 TTC39CQ8N584 583 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 SRBD1Q8N5C6 995 aaKnown RBP4.88□□□□□ -1.63
CD44-220ENST00000525688 TMEM217Q8N7C4 229 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 SEMA6DQ8NFY4 1073 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 GPR150Q8NGU9 434 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 TMEM170AQ8WVE7 144 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 FAR1Q8WVX9 515 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 USP6NLQ92738 828 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 MAP4K1Q92918 833 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 ITFG2Q969R8 447 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 KLHL29Q96CT2 875 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 VPS39Q96JC1 886 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 CLMNQ96JQ2 1002 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 CNDP1Q96KN2 507 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 PPP1R13BQ96KQ4 1090 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 KLHL15Q96M94 604 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 DACH2Q96NX9 599 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 ATP6V0BQ99437 205 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms