RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ZNF185O15231 689 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 AGTP01019 485 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 TSHRP16473 764 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 HTR1BP28222 390 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 CASQ1P31415 396 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 TRIM23P36406 574 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 ETV3P41162 512 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 PAFAH1B1P43034 410 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 KCNJ1P48048 391 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 SPINT3P49223 89 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 THOP1P52888 689 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 INPP5AQ14642 412 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 PTPRRQ15256 657 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 KCTD11Q693B1 232 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 PNCKQ6P2M8 343 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 TMC3Q7Z5M5 1100 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 LINC00523Q86TU6 105 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 SPATS2Q86XZ4 545 aaKnown RBP14.25□□□□□ -0.13
NUP54-216ENST00000514901 C17orf53Q8N3J3 647 aaPredicted RBP14.25□□□□□ -0.13
NUP54-216ENST00000514901 SLC25A41Q8N5S1 370 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 SMIM14Q96QK8 99 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 TBL1YQ9BQ87 522 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 APOOQ9BUR5 198 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 AP1M1Q9BXS5 423 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 ZNF711Q9Y462 761 aa14.25□□□□□ -0.13
NUP54-216ENST00000514901 SPTY2D1-AS1A0A0U1RR47 76 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 A0A1B0GTQ1 180 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 E7EVH7 732 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 CACNB4O00305 520 aaPredicted RBP14.24□□□□□ -0.13
NUP54-216ENST00000514901 SLC30A4O14863 429 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 PHF2O75151 1096 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 AP2A1O95782 977 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 TUBB4AP04350 444 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 PCCBP05166 539 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 C1SP09871 688 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 HMGCLP35914 325 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 COILP38432 576 aaPredicted RBP14.24□□□□□ -0.13
NUP54-216ENST00000514901 LMAN1P49257 510 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 FNTAP49354 379 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 CCT8P50990 548 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 PDE1CQ14123 709 aaPredicted RBP14.24□□□□□ -0.13
NUP54-216ENST00000514901 ZDHHC20Q5W0Z9 365 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 LYSMD3Q7Z3D4 306 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 PARGQ86W56 976 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 CREG2Q8IUH2 290 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 GRK7Q8WTQ7 553 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 AP2M1Q96CW1 435 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 ABCG8Q9H221 673 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 FAM83DQ9H4H8 585 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 ETNK1Q9HBU6 452 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 RAB6BQ9NRW1 208 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.24□□□□□ -0.13
NUP54-216ENST00000514901 SHOC2Q9UQ13 582 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 SPTBN4Q9H254 2564 aa14.24□□□□□ -0.13
NUP54-216ENST00000514901 DMXL1Q9Y485 3027 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 PCNX2A6NKB5 2137 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 GOLGA8CPA6NN73 597 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 PCDHGA12O60330 932 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 PPFIA2O75334 1257 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 PIRTP0C851 137 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 ETS1P14921 441 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 KELP23276 732 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 RPL22P35268 128 aaKnown RBP14.23□□□□□ -0.13
NUP54-216ENST00000514901 CHRNA4P43681 627 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 GPR1P46091 355 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 KIAA1024LP59773 190 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 PDE1BQ01064 536 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 SEMA5AQ13591 1074 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 NFATC4Q14934 902 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 RSPO4Q2I0M5 234 aaPredicted RBP14.23□□□□□ -0.13
NUP54-216ENST00000514901 UAP1L1Q3KQV9 507 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 CCDC137Q6PK04 289 aaKnown RBP14.23□□□□□ -0.13
NUP54-216ENST00000514901 MACC1Q6ZN28 852 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 SLC22A18ASQ8N1D0 253 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 PDCD7Q8N8D1 485 aaKnown RBP14.23□□□□□ -0.13
NUP54-216ENST00000514901 BRSK1Q8TDC3 778 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 BLOC1S5Q8TDH9 187 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 RUNDC3BQ96NL0 473 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 C19orf43Q9BQ61 176 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 RTKNQ9BST9 563 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 WDR26Q9H7D7 661 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 IL21RQ9HBE5 538 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 PHPT1Q9NRX4 125 aaPredicted RBP14.23□□□□□ -0.13
NUP54-216ENST00000514901 TM7SF3Q9NS93 570 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 NFKBIL1Q9UBC1 381 aaPredicted RBP14.23□□□□□ -0.13
NUP54-216ENST00000514901 FNDC3AQ9Y2H6 1198 aaKnown RBP14.23□□□□□ -0.13
NUP54-216ENST00000514901 SPO11Q9Y5K1 396 aa14.23□□□□□ -0.13
NUP54-216ENST00000514901 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.22□□□□□ -0.13
NUP54-216ENST00000514901 A0A0U1RQS6 177 aa14.22□□□□□ -0.13
NUP54-216ENST00000514901 C2orf81A6NN90 581 aa14.22□□□□□ -0.13
NUP54-216ENST00000514901 H3BM21 787 aa14.22□□□□□ -0.13
NUP54-216ENST00000514901 TNFRSF10CO14798 259 aa14.22□□□□□ -0.13
NUP54-216ENST00000514901 SUN1O94901 812 aa14.22□□□□□ -0.13
NUP54-216ENST00000514901 CRTAMO95727 393 aa14.22□□□□□ -0.13
NUP54-216ENST00000514901 GAS8O95995 478 aa14.22□□□□□ -0.13
NUP54-216ENST00000514901 ZSCAN5DPP0CG00 497 aa14.22□□□□□ -0.13
NUP54-216ENST00000514901 BLKP51451 505 aa14.22□□□□□ -0.13
NUP54-216ENST00000514901 DCDC1P59894 354 aa14.22□□□□□ -0.13
NUP54-216ENST00000514901 HNRNPKP61978 463 aaKnown RBP eCLIP14.22□□□□□ -0.13
NUP54-216ENST00000514901 CDK16Q00536 496 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms