RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 DOCK2Q92608 1830 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 MYOCOSA0A1B0GUC4 107 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 UBXN8O00124 270 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 PDLIM1O00151 329 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 RGS5O15539 181 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 TREHO43280 583 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 STAU1O95793 577 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 MYCP01106 439 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 SLC5A3P53794 718 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 GHRHRQ02643 423 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 ARHGAP1Q07960 439 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 DDR2Q16832 855 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 MARVELD2Q8N4S9 558 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 LINGO1Q96FE5 620 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 EXOC2Q96KP1 924 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 PPP3R2Q96LZ3 170 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 NPY6RQ99463 290 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 C6orf62Q9GZU0 229 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 RBPJLQ9UBG7 517 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 SPASTQ9UBP0 616 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 SLC2A6Q9UGQ3 507 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 CIDEBQ9UHD4 219 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 A0A1W2PQH9 124 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 NPEPPSL1A6NEC2 478 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 PRRG1O14668 218 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 RPP40O75818 363 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 HCAR3P49019 387 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 TTPAP49638 278 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 CLCNKBP51801 687 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 MERTKQ12866 999 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 LCP2Q13094 533 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 ITGA7Q13683 1181 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 NOL9Q5SY16 702 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 FAM171A1Q5VUB5 890 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 STK40Q8N2I9 435 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 STYXQ8WUJ0 223 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 FAM126AQ9BYI3 521 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 MUC13Q9H3R2 512 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 AP3M1Q9Y2T2 418 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 COL22A1Q8NFW1 1626 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 IGKV6D-21A0A0A0MT36 114 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 G3V2T6 193 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 ARHGEF9O43307 516 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 KPNA6O60684 536 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 CYBBP04839 570 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 GSNP06396 782 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 CDH3P22223 829 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 JAK1P23458 1154 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 SOAT1P35610 550 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 SH3D19Q5HYK7 790 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 KCTD8Q6ZWB6 473 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 DCBLD1Q8N8Z6 715 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 OR2T12Q8NG77 320 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 OR9I1Q8NGQ6 314 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 LIN28AQ9H9Z2 209 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 TRPM5Q9NZQ8 1165 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 PCDHB8Q9UN66 801 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 GIT1Q9Y2X7 761 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 SH3GLB1Q9Y371 365 aa8.4□□□□□ -1.06
LIMCH1-216ENST00000512820 UMPSP11172 480 aa8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 IMPDH1P20839 514 aa8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 MZF1P28698 734 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 SOX6P35712 828 aa8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 ZNF157P51786 506 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 PITX1P78337 314 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 CEACAM7Q14002 265 aa8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 CCDC85BQ15834 202 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 SPDYE7PQ495Y7 208 aa8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 BNIPLQ7Z465 357 aa8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 THAP5Q7Z6K1 395 aa8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 TMEM126BQ8IUX1 230 aa8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 LEMD2Q8NC56 503 aa8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 SPPL2AQ8TCT8 520 aa8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 UTP15Q8TED0 518 aaKnown RBP8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 TOP1MTQ969P6 601 aa8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 RNF39Q9H2S5 420 aa8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 SELENONQ9NZV5 590 aa8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 DOLKQ9UPQ8 538 aa8.4□□□□□ -1.07
LIMCH1-216ENST00000512820 AQP12BA6NM10 295 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 H7C4K7 107 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 EI24O14681 340 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 SLC7A4O43246 635 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 CNOT3O75175 753 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 ULK1O75385 1050 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 ALDH1A2O94788 518 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 CELF2O95319 508 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 SMPD1P17405 629 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 CAPGP40121 348 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 LSAMPQ13449 338 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 KRR1Q13601 381 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 OGFRL1Q5TC84 451 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 C9orf131Q5VYM1 1079 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 ZNF549Q6P9A3 640 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 NAPRTQ6XQN6 538 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 ZNF621Q6ZSS3 439 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 RPS27LQ71UM5 84 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 MON1AQ86VX9 555 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 AQP12AQ8IXF9 295 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 KCTD13Q8WZ19 329 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 TPD52L3Q96J77 140 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms