RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 NENFQ9UMX5 172 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 PCDHGB4Q9UN71 923 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 R3HDM2Q9Y2K5 976 aaKnown RBP4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 INSL5Q9Y5Q6 135 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 SNX8Q9Y5X2 465 aa4.13□□□□□ -1.75
HMGB1P28-201ENST00000507778 IGHV4-28A0A0C4DH34 117 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 C1orf226A1L170 272 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 CDRT15L2A8MXV6 281 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 INAFM1C9JVW0 142 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 TIMM23O14925 209 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 HSPA12AO43301 675 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 TMCC2O75069 709 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 FTCDO95954 541 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 CRYABP02511 175 aaKnown RBP4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 SRPRAP08240 638 aaKnown RBP4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 CDK4P11802 303 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 MAOAP21397 527 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 HNRNPH1P31943 449 aaKnown RBP4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 RPL3P39023 403 aaKnown RBP4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 COMPP49747 757 aaPredicted RBP4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 ACSM2AQ08AH3 577 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 LRMPQ12912 555 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 STK4Q13043 487 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 IKQ13123 557 aaPredicted RBP4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 ACSM2BQ68CK6 577 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 PMS2CLQ68D20 193 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 TYW3Q6IPR3 259 aaKnown RBP4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 DLK2Q6UY11 383 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 B3GNT6Q6ZMB0 384 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 HACE1Q8IYU2 909 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 DSELQ8IZU8 1212 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 SNRNP27Q8WVK2 155 aaKnown RBP4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 SAT2Q96F10 170 aaPredicted RBP4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 ELMOD3Q96FG2 381 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 OR2A14Q96R47 310 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 ACOX2Q99424 681 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 SH3GL2Q99962 352 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 MMTAG2Q9BU76 263 aaKnown RBP4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 MXD3Q9BW11 206 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 C1QTNF7Q9BXJ2 289 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 PLK3Q9H4B4 646 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 ANKEF1Q9NU02 776 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 SETD4Q9NVD3 440 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 OGFRQ9NZT2 677 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 CWC15Q9P013 229 aaKnown RBP4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 RPS6KA6Q9UK32 745 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 TTC7AQ9ULT0 858 aaPredicted RBP4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 CDC14AQ9UNH5 594 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 PTGDR2Q9Y5Y4 395 aa4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 ARHGEF17Q96PE2 2063 aaPredicted RBP4.12□□□□□ -1.75
HMGB1P28-201ENST00000507778 VCYO14598 125 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 TIMM44O43615 452 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 ZIC3O60481 467 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 GPC4O75487 556 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 DAB1O75553 588 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 BEST1O76090 585 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 HIST1H2ABP04908 130 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 G6PDP11413 515 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 ACTN1P12814 892 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 HIST1H2ADP20671 130 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 HOXC9P31274 260 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 EIF2DP41214 584 aaKnown RBP4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 PRCPP42785 496 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 MXI1P50539 228 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 MRPL12P52815 198 aaKnown RBP4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 ABATP80404 500 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 GRIK2Q13002 908 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 PCGF3Q3KNV8 242 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 LRIF1Q5T3J3 769 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 MFSD4BQ5TF39 518 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 DAB2IPQ5VWQ8 1189 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 DPPA4Q7L190 304 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 HIST3H2AQ7L7L0 130 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 CACNA2D4Q7Z3S7 1137 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 C1QL2Q7Z5L3 287 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 TECPR1Q7Z6L1 1165 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 GALNT5Q7Z7M9 940 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 ZC3HC1Q86WB0 502 aaKnown RBP4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 TMTC2Q8N394 836 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 HJURPQ8NCD3 748 aaPredicted RBP4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 SRSF8Q9BRL6 282 aaKnown RBP4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 SF3B5Q9BWJ5 86 aaKnown RBP4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 DCLK3Q9C098 648 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 PPP1R3EQ9H7J1 279 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 PLSCR4Q9NRQ2 329 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 NKIRAS2Q9NYR9 191 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 POLG2Q9UHN1 485 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 NRBP1Q9UHY1 535 aa4.11□□□□□ -1.75
HMGB1P28-201ENST00000507778 CTDSP2O14595 271 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 TPPPO94811 219 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 TOMM40O96008 361 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 AKR1B1P15121 316 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 SAT1P21673 171 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 PON1P27169 355 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 CDC25AP30304 524 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 STX2P32856 288 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 EIF2S3P41091 472 aaKnown RBP4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 AMTP48728 403 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 PGGT1BP53609 377 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 MFAP4P55083 255 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms