RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 HSPH1Q92598 858 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 PMEPA1Q969W9 287 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 PSKH2Q96QS6 385 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 CMKLR1Q99788 373 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 FAM117AQ9C073 453 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 HAUS4Q9H6D7 363 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 ZWILCHQ9H900 591 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 NOD2Q9HC29 1040 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 TAAR2Q9P1P5 351 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 CD84Q9UIB8 345 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 SUFUQ9UMX1 484 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 PCDHGA4Q9Y5G9 962 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 FLNCQ14315 2725 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 NPIPB15A6NHN6 443 aaPredicted RBP12.63□□□□□ -0.39
SKA1-205ENST00000494518 NUDT21O43809 227 aaKnown RBP12.63□□□□□ -0.39
SKA1-205ENST00000494518 HEXIM1O94992 359 aaKnown RBP12.63□□□□□ -0.39
SKA1-205ENST00000494518 FTLP02792 175 aaPredicted RBP12.63□□□□□ -0.39
SKA1-205ENST00000494518 FGF1P05230 155 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 CEACAM5P06731 702 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 HOXC4P09017 264 aaPredicted RBP12.63□□□□□ -0.39
SKA1-205ENST00000494518 PNLIPP16233 465 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 IL1R2P27930 398 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 RENBPP51606 427 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 CDK3Q00526 305 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 ILF3Q12906 894 aaKnown RBP eCLIP12.63□□□□□ -0.39
SKA1-205ENST00000494518 RAET1GQ6H3X3 334 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 ZNF574Q6ZN55 896 aaPredicted RBP12.63□□□□□ -0.39
SKA1-205ENST00000494518 TRIM74Q86UV6 250 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.63□□□□□ -0.39
SKA1-205ENST00000494518 KIAA1524Q8TCG1 905 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 GPBAR1Q8TDU6 330 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 DTD2Q96FN9 168 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 CCDC74BQ96LY2 380 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 GSDMCQ9BYG8 508 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 CLMPQ9H6B4 373 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 SEPT10Q9P0V9 454 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 ACSL6Q9UKU0 697 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 HEMK1Q9Y5R4 338 aaPredicted RBP12.63□□□□□ -0.39
SKA1-205ENST00000494518 ST14Q9Y5Y6 855 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 COL12A1Q99715 3063 aa12.63□□□□□ -0.39
SKA1-205ENST00000494518 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.62□□□□□ -0.39
SKA1-205ENST00000494518 LRRC10BA6NIK2 292 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 EIF3CLB5ME19 914 aaKnown RBP12.62□□□□□ -0.39
SKA1-205ENST00000494518 H3BRJ5 948 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 PDE2AO00408 941 aaPredicted RBP12.62□□□□□ -0.39
SKA1-205ENST00000494518 DDX3XO00571 662 aaKnown RBP eCLIP12.62□□□□□ -0.392e-9■■■■■ 31.8
SKA1-205ENST00000494518 HTRA2O43464 458 aaPredicted RBP12.62□□□□□ -0.39
SKA1-205ENST00000494518 CPNE6O95741 557 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 PEX11BO96011 259 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 SKILP12757 684 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 PPM1FP49593 454 aaPredicted RBP12.62□□□□□ -0.39
SKA1-205ENST00000494518 CTBSQ01459 385 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 KCNC4Q03721 635 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 TSR1Q2NL82 804 aaKnown RBP12.62□□□□□ -0.39
SKA1-205ENST00000494518 TXNRD3NBQ6F5E7 133 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 Q6ZVL8 140 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 MARK2Q7KZI7 788 aaKnown RBP12.62□□□□□ -0.39
SKA1-205ENST00000494518 PIM3Q86V86 326 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 ZNF761Q86XN6 746 aaPredicted RBP12.62□□□□□ -0.39
SKA1-205ENST00000494518 ATPAF2Q8N5M1 289 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 HTR3CQ8WXA8 447 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 COL26A1Q96A83 441 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 NUDCD1Q96RS6 583 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 EIF3CQ99613 913 aaKnown RBP12.62□□□□□ -0.39
SKA1-205ENST00000494518 TEX101Q9BY14 249 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 FRMD8Q9BZ67 464 aaPredicted RBP12.62□□□□□ -0.39
SKA1-205ENST00000494518 ZMYND15Q9H091 742 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.62□□□□□ -0.39
SKA1-205ENST00000494518 TMEM98Q9Y2Y6 226 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 PCDHB11Q9Y5F2 797 aa12.62□□□□□ -0.39
SKA1-205ENST00000494518 UBR5O95071 2799 aaPredicted RBP12.62□□□□□ -0.39
SKA1-205ENST00000494518 TRBV23OR9-2A0A075B6M9 112 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 IGHV5-10-1A0A0J9YXX1 117 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 PPM1DO15297 605 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 SOCS5O75159 536 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 WISP1O95388 367 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 CYP2A6P11509 494 aaPredicted RBP12.61□□□□□ -0.39
SKA1-205ENST00000494518 CR2P20023 1033 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 CSF2RBP32927 897 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 ADCY8P40145 1251 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 ARL4AP40617 200 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 ACTR1BP42025 376 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 GPR1P46091 355 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 ACTR1AP61163 376 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 TBR1Q16650 682 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 PPP1R2P3Q6NXS1 205 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 TMCO3Q6UWJ1 677 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 ZNF438Q7Z4V0 828 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 NAGSQ8N159 534 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 TMEM159Q96B96 161 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 BTBD6Q96KE9 485 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 ZNF599Q96NL3 588 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 CSPG4P5Q96PW8 444 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 NT5MQ9NPB1 228 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 AKAP7Q9P0M2 348 aaPredicted RBP12.61□□□□□ -0.39
SKA1-205ENST00000494518 TMEM9Q9P0T7 183 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 PHTF1Q9UMS5 762 aa12.61□□□□□ -0.39
SKA1-205ENST00000494518 A0A1W2PQC6 194 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 MAFKO60675 156 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 PGLSO95336 258 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms