RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 GOLGA6CA6NDK9 693 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 GOLGA6BA6NDN3 693 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 H3BM21 787 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 K7ESM1 405 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 CACNB4O00305 520 aaPredicted RBP16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SDC3O75056 442 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PIAS2O75928 621 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 CSF2P04141 144 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 FGF1P05230 155 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 GOLGA6DP0CG33 693 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 CEACAM1P13688 526 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 NME1P15531 152 aaKnown RBP16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 HTR1BP28222 390 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 STIP1P31948 543 aaKnown RBP16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 TRIM23P36406 574 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 CHRNA4P43681 627 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 KIAA1024LP59773 190 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 HNRNPKP61978 463 aaKnown RBP eCLIP16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 DPTQ07507 201 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SNX1Q13596 522 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 CCNG2Q16589 344 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PARP6Q2NL67 630 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 P3H1Q32P28 736 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ZNF542PQ5EBM4 170 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PPM1JQ5JR12 505 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 RAET1GQ6H3X3 334 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ATL2Q8NHH9 583 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 FUBP1Q96AE4 644 aaKnown RBP16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 AP2M1Q96CW1 435 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ABCG8Q9H221 673 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 WDR26Q9H7D7 661 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ZFYVE1Q9HBF4 777 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 GOLGA6AQ9NYA3 693 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 CD84Q9UIB8 345 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PCOLCE2Q9UKZ9 415 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SHOC2Q9UQ13 582 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ZNF148Q9UQR1 794 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 BTBD3Q9Y2F9 522 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 CEP250Q9BV73 2442 aa16.25■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 AGTP01019 485 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SLC4A1P02730 911 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 HOXC4P09017 264 aaPredicted RBP16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 DGKAP23743 735 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 TEAD1P28347 426 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SPINT3P49223 89 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 DRICH1Q6PGQ1 229 aaPredicted RBP16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ENPP7Q6UWV6 458 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 KANSL1Q7Z3B3 1105 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 TMC3Q7Z5M5 1100 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 HEATR4Q86WZ0 1026 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 KLHDC8BQ8IXV7 354 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 RASGEF1CQ8N431 466 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 RHBDD1Q8TEB9 315 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SCAMP4Q969E2 229 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 LRRC45Q96CN5 670 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 WDR92Q96MX6 357 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 GPR63Q9BZJ6 419 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PHPT1Q9NRX4 125 aaPredicted RBP16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 KLQ9UEF7 1012 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 KLF15Q9UIH9 416 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SPO11Q9Y5K1 396 aa16.24■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ASCC3Q8N3C0 2202 aaKnown RBP16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 RGSL1A5PLK6 1076 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 GIPC1O14908 333 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 CBFA2T3O75081 653 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 METTL18O95568 372 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 IFNB1P01574 187 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PYGLP06737 847 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 MYCLP1P12525 358 aaPredicted RBP16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 JUNDP17535 347 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 KELP23276 732 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ADRA1AP35348 466 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 GPR1P46091 355 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PPARDQ03181 441 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 NLRP8Q86W28 1048 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PHACTR4Q8IZ21 702 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 BAHD1Q8TBE0 780 aaPredicted RBP16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 BTN2A2Q8WVV5 523 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 EID2BQ96D98 161 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 OSBPL9Q96SU4 736 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 TBL1YQ9BQ87 522 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 RIOK2Q9BVS4 552 aaKnown RBP16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 TEX101Q9BY14 249 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 TRABDQ9H4I3 376 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 CAAP1Q9H8G2 361 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 HOMER3Q9NSC5 361 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 HACD3Q9P035 362 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 APOBEC3BQ9UH17 382 aaKnown RBP16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PNMA8BQ9ULN7 279 aaPredicted RBP16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SNX12Q9UMY4 172 aa16.23■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 PDE2AO00408 941 aaPredicted RBP16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 SOD1P00441 154 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ACTN2P35609 894 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 BLKP51451 505 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 GNG11P61952 73 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 CDK3Q00526 305 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 OLIG2Q13516 323 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 ALG11Q2TAA5 492 aa16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 HENMT1Q5T8I9 393 aaKnown RBP16.22■□□□□ 0.19
MSH5-SAPCD1-206ENST00000491552 FAXCQ5TGI0 409 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms