RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 METTL2BQ6P1Q9 378 aaKnown RBP5.98□□□□□ -1.45
USP40-213ENST00000483216 ATF7IPQ6VMQ6 1270 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.98□□□□□ -1.45
USP40-213ENST00000483216 QSOX2Q6ZRP7 698 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 C18orf65Q6ZTR6 163 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 WFIKKN2Q8TEU8 576 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 GTF3C6Q969F1 213 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 METTL2AQ96IZ6 378 aaKnown RBP5.98□□□□□ -1.45
USP40-213ENST00000483216 ADGRG7Q96K78 797 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 PKNOX2Q96KN3 472 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 ZNF385AQ96PM9 386 aaKnown RBP5.98□□□□□ -1.45
USP40-213ENST00000483216 SH3GL2Q99962 352 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 C1QTNF4Q9BXJ3 329 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 KCNN2Q9H2S1 579 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 RANBP17Q9H2T7 1088 aaKnown RBP5.98□□□□□ -1.45
USP40-213ENST00000483216 NOX4Q9NPH5 578 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 CNGB3Q9NQW8 809 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 ERVK-11Q9UQG0 969 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 CEPT1Q9Y6K0 416 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 CAPN7Q9Y6W3 813 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 KIAA0586Q9BVV6 1533 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 MYOM3Q5VTT5 1437 aa5.98□□□□□ -1.45
USP40-213ENST00000483216 KIAA0556O60303 1618 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 J3KRW8 73 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 SLC16A5O15375 505 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 TGFB1I1O43294 461 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 PLRG1O43660 514 aaKnown RBP5.97□□□□□ -1.45
USP40-213ENST00000483216 CYC1P08574 325 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 EIF2S3P41091 472 aaKnown RBP5.97□□□□□ -1.45
USP40-213ENST00000483216 SORDQ00796 357 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 SNTA1Q13424 505 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 OLIG2Q13516 323 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 DRAP1Q14919 205 aaPredicted RBP5.97□□□□□ -1.45
USP40-213ENST00000483216 CCNG2Q16589 344 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 C6orf141Q5SZD1 244 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 SPSB3Q6PJ21 355 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 TAOK1Q7L7X3 1001 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 DCP1BQ8IZD4 617 aaKnown RBP5.97□□□□□ -1.45
USP40-213ENST00000483216 NEK9Q8TD19 979 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 PSPC1Q8WXF1 523 aaKnown RBP5.97□□□□□ -1.45
USP40-213ENST00000483216 KXD1Q9BQD3 176 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 STRA6Q9BX79 667 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 GPR108Q9NPR9 543 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 HINT3Q9NQE9 182 aaKnown RBP5.97□□□□□ -1.45
USP40-213ENST00000483216 SMARCAL1Q9NZC9 954 aa5.97□□□□□ -1.45
USP40-213ENST00000483216 SMG6Q86US8 1419 aaKnown RBP5.97□□□□□ -1.45
USP40-213ENST00000483216 PTPN23Q9H3S7 1636 aa5.96□□□□□ -1.45
USP40-213ENST00000483216 EPRSP07814 1512 aaKnown RBP5.96□□□□□ -1.46
USP40-213ENST00000483216 MAGI3Q5TCQ9 1506 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 A0A1B0GUV1 79 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 MAGEA13PA6NCF6 341 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 PRSS44E7EML9 344 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 SOCS6O14544 535 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 RTN3O95197 1032 aaPredicted RBP5.96□□□□□ -1.46
USP40-213ENST00000483216 G6PDP11413 515 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 PTMSP20962 102 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 ICAM3P32942 547 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 PIP4K2AP48426 406 aaPredicted RBP5.96□□□□□ -1.46
USP40-213ENST00000483216 CCR9P51686 369 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 RRP1P56182 461 aaKnown RBP5.96□□□□□ -1.46
USP40-213ENST00000483216 MPP1Q00013 466 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 COASYQ13057 564 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 COL28A1Q2UY09 1125 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 SLC45A4Q5BKX6 768 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 FAM122CQ6P4D5 195 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 GSTA5Q7RTV2 222 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 MTERF4Q7Z6M4 381 aaKnown RBP5.96□□□□□ -1.46
USP40-213ENST00000483216 FOXRED2Q8IWF2 684 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 DIS3L2Q8IYB7 885 aaKnown RBP5.96□□□□□ -1.46
USP40-213ENST00000483216 DSELQ8IZU8 1212 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 SPATA6LQ8N4H0 392 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 MAGEC3Q8TD91 643 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 BICD1Q96G01 975 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 MAP7D2Q96T17 732 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 PIP5K1AQ99755 562 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 IFIH1Q9BYX4 1025 aaKnown RBP5.96□□□□□ -1.46
USP40-213ENST00000483216 NDST4Q9H3R1 872 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 ZNF69Q9UC07 566 aa5.96□□□□□ -1.46
USP40-213ENST00000483216 TCOF1Q13428 1488 aaKnown RBP5.96□□□□□ -1.46
USP40-213ENST00000483216 ROCK2O75116 1388 aaKnown RBP5.95□□□□□ -1.46
USP40-213ENST00000483216 A0A1W2PRG0 241 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 PLSCR5A0PG75 271 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 HFM1A2PYH4 1435 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 DENND3A2RUS2 1198 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 SMTNL1A8MU46 457 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 SNAP23O00161 211 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 RFPL2O75678 378 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 CLDN14O95500 239 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 PMS2P2O95744 297 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 FTCDO95954 541 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 RARSP54136 660 aaKnown RBP5.95□□□□□ -1.46
USP40-213ENST00000483216 GAS1P54826 345 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 BECN1Q14457 450 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 TSTQ16762 297 aaKnown RBP5.95□□□□□ -1.46
USP40-213ENST00000483216 EIF2S3LQ2VIR3 472 aaKnown RBP5.95□□□□□ -1.46
USP40-213ENST00000483216 PAPPA-AS1Q5QFB9 102 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 GGNBP1Q5YKI7 109 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 HIST2H2BCQ6DN03 193 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 HIST2H2BDQ6DRA6 164 aa5.95□□□□□ -1.46
USP40-213ENST00000483216 CHERPQ8IWX8 916 aaKnown RBP5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms