RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 NSMCE3Q96MG7 304 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 BBC3Q96PG8 261 aaPredicted RBP12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 FRMD8Q9BZ67 464 aaPredicted RBP12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 LRRN3Q9H3W5 708 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 SIRPGQ9P1W8 387 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 RPL26L1Q9UNX3 145 aaKnown RBP12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 PCDHGA7Q9Y5G6 932 aa12.13□□□□□ -0.47
SQSTM1-207ENST00000481335 A0A1W2PNU3 283 aaPredicted RBP12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 NPIPB15A6NHN6 443 aaPredicted RBP12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 PLD2O14939 933 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 CBFA2T2O43439 604 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 MFSD11O43934 449 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 NOBOXO60393 691 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 RPLP0P05388 317 aaKnown RBP12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 IVLP07476 585 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 CCNB1P14635 433 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 LHCGRP22888 699 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 CASP14P31944 242 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 INHBCP55103 352 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 MAXP61244 160 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 NR1D2Q14995 579 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 SPECC1LQ69YQ0 1117 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 RAET1GQ6H3X3 334 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 C17orf82Q86X59 251 aaPredicted RBP12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 CCNJLQ8IV13 435 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 KCTD6Q8NC69 237 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 CPLX3Q8WVH0 158 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 PIH1D2Q8WWB5 315 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 HDAC11Q96DB2 347 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 SCARF2Q96GP6 870 aaPredicted RBP12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 BTBD6Q96KE9 485 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 LYSMD1Q96S90 227 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 SEMA3CQ99985 751 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 LGR4Q9BXB1 951 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 TDRD1Q9BXT4 1180 aaKnown RBP12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 B3GNT4Q9C0J1 378 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 TMEM168Q9H0V1 697 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 CDH19Q9H159 772 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 DPEP2Q9H4A9 486 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 CYP4F12Q9HCS2 524 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 MRPL40Q9NQ50 206 aaKnown RBP12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 IFNKQ9P0W0 207 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 CTTNBP2NLQ9P2B4 639 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 RABGEF1Q9UJ41 708 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 SLC17A4Q9Y2C5 497 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 RAI2Q9Y5P3 530 aa12.12□□□□□ -0.47
SQSTM1-207ENST00000481335 A0A0J9YYE9 177 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 A0A1W2PQM1 296 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 KLK10O43240 276 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 TRBC1P01850 177 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 CEACAM5P06731 702 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 ETV3P41162 512 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 SSR1P43307 286 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 EPHB1P54762 984 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 CXADRP78310 365 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 CCL7P80098 99 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 SKOR2Q2VWA4 1001 aaPredicted RBP12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 ANKRD20A8PQ5CZ79 823 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 KCTD16Q68DU8 428 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 ADAMTSL4Q6UY14 1074 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 RAB11FIP2Q7L804 512 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 ZNF438Q7Z4V0 828 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 HSD11B1LQ7Z5J1 315 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 SPRED1Q7Z699 444 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 TECPR1Q7Z6L1 1165 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 NRSN1Q8IZ57 195 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 OR8K1Q8NGG5 319 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 SLC39A7Q92504 469 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 ZNF830Q96NB3 372 aaPredicted RBP12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 DNAJC7Q99615 494 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 ANP32EQ9BTT0 268 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 DEF6Q9H4E7 631 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 SYNDIG1Q9H7V2 258 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 CARS2Q9HA77 564 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 NT5MQ9NPB1 228 aa12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 ZNHIT6Q9NWK9 470 aaKnown RBP12.11□□□□□ -0.47
SQSTM1-207ENST00000481335 TTC24A2A3L6 582 aaPredicted RBP12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 RGSL1A5PLK6 1076 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 A8MX80 341 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 B4DGG1 531 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 TNFSF15O95150 251 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 CD48P09326 243 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 TPM1P09493 284 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 TMEM253P0C7T8 217 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 ARHGAP25P42331 645 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 GPR3P46089 330 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 GPR1P46091 355 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 ZFP36L1Q07352 338 aaKnown RBP12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 VAC14Q08AM6 782 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 C19orf57Q0VDD7 668 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 MMRN1Q13201 1228 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 LRP8Q14114 963 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 ASTE1Q2TB18 679 aaPredicted RBP12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 ZSCAN23Q3MJ62 389 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 LRRC66Q68CR7 880 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 Q6ZVL8 140 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 RHOT2Q8IXI1 618 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 PELI3Q8N2H9 469 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 FBXO39Q8N4B4 442 aa12.1□□□□□ -0.47
SQSTM1-207ENST00000481335 CMKLR1Q99788 373 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms