RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 C1orf87Q8N0U7 546 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 LYG1Q8N1E2 194 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 TEX19Q8NA77 164 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 DNAAF1Q8NEP3 725 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 OR10V1Q8NGI7 309 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 DUSP19Q8WTR2 217 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 STAMQ92783 540 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 ABTB1Q969K4 478 aaPredicted RBP3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 MPP4Q96JB8 637 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 PPM1MQ96MI6 270 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 HAUS8Q9BT25 410 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 GPR63Q9BZJ6 419 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 UBN1Q9NPG3 1134 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 PAK5Q9P286 719 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 PNMA2Q9UL42 364 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 CNPY2Q9Y2B0 182 aa3.15□□□□□ -1.91
CCDC88A-212ENST00000474059 A0A087X002 238 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 TYW5A2RUC4 315 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 A6NLC8 198 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 HSPB2A8KAH6 182 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 EPB41L2O43491 1005 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 DHX16O60231 1041 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 TSPAN3O60637 253 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 TNFAIP3P21580 790 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 LUMP51884 338 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 VAMP2P63027 116 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 RALBP1Q15311 655 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 HSPB2Q16082 182 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 WDR45BQ5MNZ6 344 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 ANKRD54Q6NXT1 300 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 APLFQ8IW19 511 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 WDR63Q8IWG1 891 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 RNFT2Q96EX2 444 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 ZNF583Q96ND8 569 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 FSD1Q9BTV5 496 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 NPLQ9BXD5 320 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 KCNN2Q9H2S1 579 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 PCDH9Q9HC56 1237 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 CD207Q9UJ71 328 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 PRSS21Q9Y6M0 314 aa3.14□□□□□ -1.91
CCDC88A-212ENST00000474059 ANP32CO43423 234 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 ATP1A3P13637 1013 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 S1PR1P21453 382 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 HNF1BP35680 557 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 NR1H2P55055 460 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 DDX10Q13206 875 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 KCNT1Q5JUK3 1230 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 SLC9C2Q5TAH2 1124 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 DENND1BQ6P3S1 775 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 PARP16Q8N5Y8 322 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 NOC3LQ8WTT2 800 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 TMEM190Q8WZ59 177 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 SH3KBP1Q96B97 665 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 RRP36Q96EU6 259 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 MASTLQ96GX5 879 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 CLSTN3Q9BQT9 956 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 PHF7Q9BWX1 381 aaPredicted RBP3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 SLC26A6Q9BXS9 759 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 STN1Q9H668 368 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 ESRP2Q9H6T0 727 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 DDX4Q9NQI0 724 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 HSF4Q9ULV5 492 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 GDAQ9Y2T3 454 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 TMEM98Q9Y2Y6 226 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 NFE2L3Q9Y4A8 694 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 RNF215Q9Y6U7 377 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 A3GALT2U3KPV4 340 aa3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 ATXN2Q99700 1313 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-212ENST00000474059 CCDC196A0A1B0GTZ2 297 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 NR5A2O00482 541 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 PEX12O00623 359 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 ATP2C2O75185 946 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 HNRNPA1P09651 372 aaKnown RBP eCLIP3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 IFIT1P09914 478 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 WEE2P0C1S8 567 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 PCNAP12004 261 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 CD58P19256 250 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 ELF1P32519 619 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 DDIT3P35638 169 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 PGM1P36871 562 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 CSRP3P50461 194 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 MPP1Q00013 466 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 RUNX2Q13950 521 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 SLC18A3Q16572 532 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 ZNF239Q16600 458 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 IRAK1BP1Q5VVH5 260 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 SLC35E4Q6ICL7 350 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 TMED8Q6PL24 325 aaPredicted RBP3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 CEACAM20Q6UY09 585 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 LRRC8DQ7L1W4 858 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 KMT5CQ86Y97 462 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 ZNF34Q8IZ26 560 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 METTL27Q8N6F8 245 aaPredicted RBP3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 PCYOX1LQ8NBM8 494 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 ZNF248Q8NDW4 579 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 ST8SIA4Q92187 359 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 ASCL2Q99929 193 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 AGXT2Q9BYV1 514 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms