RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 RHOT1Q8IXI2 618 aa19.06■□□□□ 0.64
COL7A1-207ENST00000467985 PELI3Q8N2H9 469 aa19.06■□□□□ 0.64
COL7A1-207ENST00000467985 FAM46DQ8NEK8 389 aa19.06■□□□□ 0.64
COL7A1-207ENST00000467985 ARRDC2Q8TBH0 407 aa19.06■□□□□ 0.64
COL7A1-207ENST00000467985 MRFAP1L1Q96HT8 127 aa19.06■□□□□ 0.64
COL7A1-207ENST00000467985 TDRD1Q9BXT4 1180 aaKnown RBP19.06■□□□□ 0.64
COL7A1-207ENST00000467985 MRPL40Q9NQ50 206 aaKnown RBP19.06■□□□□ 0.64
COL7A1-207ENST00000467985 DDX56Q9NY93 547 aaKnown RBP19.06■□□□□ 0.64
COL7A1-207ENST00000467985 MOSPD1Q9UJG1 213 aa19.06■□□□□ 0.64
COL7A1-207ENST00000467985 GOLGA6CA6NDK9 693 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 GOLGA6BA6NDN3 693 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 CAPN8A6NHC0 703 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 TLX3O43711 291 aaPredicted RBP19.05■□□□□ 0.64
COL7A1-207ENST00000467985 GOLGA6DP0CG33 693 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 GABREP78334 506 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 PPIDQ08752 370 aaKnown RBP19.05■□□□□ 0.64
COL7A1-207ENST00000467985 PEX6Q13608 980 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 LRRC66Q68CR7 880 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 KCTD16Q68DU8 428 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 SLC9A4Q6AI14 798 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 RAET1GQ6H3X3 334 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 OGFOD3Q6PK18 319 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 CRTC1Q6UUV9 634 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 NYAP1Q6ZVC0 841 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 ZNF765Q7L2R6 523 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 TECPR1Q7Z6L1 1165 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 PDZD3Q86UT5 571 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 NLRP8Q86W28 1048 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 PLD5Q8N7P1 536 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 GPR156Q8NFN8 814 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 GOLGA6AQ9NYA3 693 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 HEY1Q9Y5J3 304 aa19.05■□□□□ 0.64
COL7A1-207ENST00000467985 C3orf70A6NLC5 250 aaPredicted RBP19.04■□□□□ 0.64
COL7A1-207ENST00000467985 GOLGA6L6A8MZA4 724 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 TMX2-CTNND1H3BSU7 103 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 APOL1O14791 398 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 KRT1P04264 644 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 MPOP05164 745 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 HLA-DQB2P05538 268 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 CEACAM5P06731 702 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 ERVPABLB-1P60509 514 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 IFI35P80217 286 aaPredicted RBP19.04■□□□□ 0.64
COL7A1-207ENST00000467985 CDK3Q00526 305 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 PTSQ03393 145 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 ILF3Q12906 894 aaKnown RBP eCLIP19.04■□□□□ 0.64
COL7A1-207ENST00000467985 PDK1Q15118 436 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 IGF2-ASQ6U949 168 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 ADAMTSL4Q6UY14 1074 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 NRSN1Q8IZ57 195 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.04■□□□□ 0.64
COL7A1-207ENST00000467985 KIAA1524Q8TCG1 905 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 CCDC74AQ96AQ1 378 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 AP2M1Q96CW1 435 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 LGMNQ99538 433 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 ADGRE3Q9BY15 652 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 GSDMCQ9BYG8 508 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 FRMD8Q9BZ67 464 aaPredicted RBP19.04■□□□□ 0.64
COL7A1-207ENST00000467985 BRD8Q9H0E9 1235 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 TMEM168Q9H0V1 697 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 CARS2Q9HA77 564 aaKnown RBP19.04■□□□□ 0.64
COL7A1-207ENST00000467985 PCDH9Q9HC56 1237 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 TRNAU1APQ9NX07 287 aaKnown RBP19.04■□□□□ 0.64
COL7A1-207ENST00000467985 CHKBQ9Y259 395 aa19.04■□□□□ 0.64
COL7A1-207ENST00000467985 KALRNO60229 2985 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 NTN3O00634 580 aaPredicted RBP19.03■□□□□ 0.64
COL7A1-207ENST00000467985 PPP1R12AO14974 1030 aaPredicted RBP19.03■□□□□ 0.64
COL7A1-207ENST00000467985 SPOPO43791 374 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 JCHAINP01591 159 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 PNLIPP16233 465 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 GLB1P16278 677 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 GPR1P46091 355 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 STC1P52823 247 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 PCBP4P57723 403 aaKnown RBP19.03■□□□□ 0.64
COL7A1-207ENST00000467985 NIPAL4Q0D2K0 466 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 GPBAR1Q8TDU6 330 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 ATXN7L3BQ96GX2 97 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 GFM1Q96RP9 751 aaKnown RBP19.03■□□□□ 0.64
COL7A1-207ENST00000467985 LYSMD1Q96S90 227 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 ABCG8Q9H221 673 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 DPEP2Q9H4A9 486 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 SYNDIG1Q9H7V2 258 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 THSD1Q9NS62 852 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 APPL1Q9UKG1 709 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 SLC17A4Q9Y2C5 497 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 ENTPD2Q9Y5L3 495 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 ATRXP46100 2492 aa19.03■□□□□ 0.64
COL7A1-207ENST00000467985 COL27A1Q8IZC6 1860 aaPredicted RBP19.03■□□□□ 0.64
COL7A1-207ENST00000467985 SMG1Q96Q15 3661 aaKnown RBP19.03■□□□□ 0.64
COL7A1-207ENST00000467985 KCNK1O00180 336 aa19.02■□□□□ 0.64
COL7A1-207ENST00000467985 IVLP07476 585 aa19.02■□□□□ 0.64
COL7A1-207ENST00000467985 RBMS1P29558 406 aaKnown RBP19.02■□□□□ 0.64
COL7A1-207ENST00000467985 MLLT3P42568 568 aaPredicted RBP19.02■□□□□ 0.64
COL7A1-207ENST00000467985 HADHBP55084 474 aaKnown RBP19.02■□□□□ 0.64
COL7A1-207ENST00000467985 AP1B1Q10567 949 aa19.02■□□□□ 0.64
COL7A1-207ENST00000467985 IHHQ14623 411 aa19.02■□□□□ 0.64
COL7A1-207ENST00000467985 PTPRRQ15256 657 aa19.02■□□□□ 0.64
COL7A1-207ENST00000467985 C14orf28Q4W4Y0 310 aa19.02■□□□□ 0.64
COL7A1-207ENST00000467985 CERCAMQ5T4B2 595 aa19.02■□□□□ 0.64
COL7A1-207ENST00000467985 BZW1Q7L1Q6 419 aaKnown RBP19.02■□□□□ 0.64
COL7A1-207ENST00000467985 RFX6Q8HWS3 928 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 225.5 ms