RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 CCDC3Q9BQI4 270 aa17.84■□□□□ 0.45
MSH6-207ENST00000456246 LGR4Q9BXB1 951 aa17.84■□□□□ 0.45
MSH6-207ENST00000456246 CYP4F12Q9HCS2 524 aa17.84■□□□□ 0.45
MSH6-207ENST00000456246 MOSPD1Q9UJG1 213 aa17.84■□□□□ 0.45
MSH6-207ENST00000456246 A0A0A6YYK5 440 aaPredicted RBP17.83■□□□□ 0.44
MSH6-207ENST00000456246 GOLGA6CA6NDK9 693 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 GOLGA6BA6NDN3 693 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 KCNK1O00180 336 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 RRP8O43159 456 aaKnown RBP17.83■□□□□ 0.44
MSH6-207ENST00000456246 BRINP1O60477 761 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 DXOO77932 396 aaKnown RBP17.83■□□□□ 0.44
MSH6-207ENST00000456246 JCHAINP01591 159 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 GOLGA6DP0CG33 693 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 COMTP21964 271 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 NOP2P46087 812 aaKnown RBP17.83■□□□□ 0.44
MSH6-207ENST00000456246 GPR1P46091 355 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 LSSP48449 732 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 NR2C2P49116 596 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 AP1B1Q10567 949 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 ILF3Q12906 894 aaKnown RBP eCLIP17.83■□□□□ 0.441e-6■■■□□ 16.2
MSH6-207ENST00000456246 SPIDRQ14159 915 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 TFDP2Q14188 446 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 TBC1D25Q3MII6 688 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 PERM1Q5SV97 790 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 LRRC69Q6ZNQ3 347 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 RFX6Q8HWS3 928 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 GPR156Q8NFN8 814 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 FGF11Q92914 225 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 AP2M1Q96CW1 435 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 CALR3Q96L12 384 aaKnown RBP17.83■□□□□ 0.44
MSH6-207ENST00000456246 ZNF578Q96N58 590 aaPredicted RBP17.83■□□□□ 0.44
MSH6-207ENST00000456246 OLFM3Q96PB7 478 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 ADGRE3Q9BY15 652 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 FRMD8Q9BZ67 464 aaPredicted RBP17.83■□□□□ 0.44
MSH6-207ENST00000456246 TRNAU1APQ9NX07 287 aaKnown RBP17.83■□□□□ 0.44
MSH6-207ENST00000456246 GOLGA6AQ9NYA3 693 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 SIRPGQ9P1W8 387 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 CHKBQ9Y259 395 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 PCDHB1Q9Y5F3 818 aa17.83■□□□□ 0.44
MSH6-207ENST00000456246 USP12O75317 370 aa17.82■□□□□ 0.44
MSH6-207ENST00000456246 STC1P52823 247 aa17.82■□□□□ 0.44
MSH6-207ENST00000456246 NIPAL4Q0D2K0 466 aa17.82■□□□□ 0.44
MSH6-207ENST00000456246 SLC14A2Q15849 920 aa17.82■□□□□ 0.44
MSH6-207ENST00000456246 OGFOD3Q6PK18 319 aa17.82■□□□□ 0.44
MSH6-207ENST00000456246 IGF2-ASQ6U949 168 aa17.82■□□□□ 0.44
MSH6-207ENST00000456246 ADAMTSL4Q6UY14 1074 aa17.82■□□□□ 0.44
MSH6-207ENST00000456246 PELI3Q8N2H9 469 aa17.82■□□□□ 0.44
MSH6-207ENST00000456246 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.82■□□□□ 0.44
MSH6-207ENST00000456246 FAM46DQ8NEK8 389 aa17.82■□□□□ 0.44
MSH6-207ENST00000456246 LPCAT1Q8NF37 534 aa17.82■□□□□ 0.44
MSH6-207ENST00000456246 MRFAP1L1Q96HT8 127 aa17.82■□□□□ 0.44
MSH6-207ENST00000456246 GSDMCQ9BYG8 508 aa17.82■□□□□ 0.44
MSH6-207ENST00000456246 TMEM168Q9H0V1 697 aa17.82■□□□□ 0.44
MSH6-207ENST00000456246 POLR1BQ9H9Y6 1135 aa17.82■□□□□ 0.44
MSH6-207ENST00000456246 CARS2Q9HA77 564 aaKnown RBP17.82■□□□□ 0.44
MSH6-207ENST00000456246 MRPL40Q9NQ50 206 aaKnown RBP17.82■□□□□ 0.44
MSH6-207ENST00000456246 SLC17A4Q9Y2C5 497 aa17.82■□□□□ 0.44
MSH6-207ENST00000456246 ADAMTS20P59510 1910 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 RGSL1A5PLK6 1076 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 TMX2-CTNND1H3BSU7 103 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 IPO7O95373 1038 aaKnown RBP17.81■□□□□ 0.44
MSH6-207ENST00000456246 PRLP01236 227 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 CEACAM5P06731 702 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 IVLP07476 585 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 PNLIPP16233 465 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 GLB1P16278 677 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 EIF2S3P41091 472 aaKnown RBP17.81■□□□□ 0.44
MSH6-207ENST00000456246 CD86P42081 329 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 MLLT3P42568 568 aaPredicted RBP17.81■□□□□ 0.44
MSH6-207ENST00000456246 ABCG1P45844 678 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 ERVPABLB-1P60509 514 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 GABREP78334 506 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 PTSQ03393 145 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 C14orf28Q4W4Y0 310 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 KCTD16Q68DU8 428 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 CNTD1Q8N815 330 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 CCHCR1Q8TD31 782 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 GPBAR1Q8TDU6 330 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 CCDC74AQ96AQ1 378 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 RNF25Q96BH1 459 aaPredicted RBP17.81■□□□□ 0.44
MSH6-207ENST00000456246 PANX2Q96RD6 677 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 MLPHQ9BV36 600 aaPredicted RBP17.81■□□□□ 0.44
MSH6-207ENST00000456246 ABCG8Q9H221 673 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 APPL1Q9UKG1 709 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.81■□□□□ 0.44
MSH6-207ENST00000456246 CELSR3Q9NYQ7 3312 aa17.81■□□□□ 0.44
MSH6-207ENST00000456246 ANKRD66B4E2M5 251 aa17.8■□□□□ 0.44
MSH6-207ENST00000456246 NTN3O00634 580 aaPredicted RBP17.8■□□□□ 0.44
MSH6-207ENST00000456246 MTSS1O43312 755 aa17.8■□□□□ 0.44
MSH6-207ENST00000456246 TLX3O43711 291 aaPredicted RBP17.8■□□□□ 0.44
MSH6-207ENST00000456246 NUDT21O43809 227 aaKnown RBP17.8■□□□□ 0.44
MSH6-207ENST00000456246 MMP2P08253 660 aa17.8■□□□□ 0.44
MSH6-207ENST00000456246 CDKN2BP42772 138 aa17.8■□□□□ 0.44
MSH6-207ENST00000456246 SKOR1P84550 965 aa17.8■□□□□ 0.44
MSH6-207ENST00000456246 ZBTB17Q13105 803 aa17.8■□□□□ 0.44
MSH6-207ENST00000456246 IHHQ14623 411 aa17.8■□□□□ 0.44
MSH6-207ENST00000456246 TCEA2Q15560 299 aa17.8■□□□□ 0.44
MSH6-207ENST00000456246 TAZQ16635 292 aa17.8■□□□□ 0.44
MSH6-207ENST00000456246 COL28A1Q2UY09 1125 aa17.8■□□□□ 0.44
MSH6-207ENST00000456246 TFDP3Q5H9I0 405 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms