RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 AMPD1P23109 780 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 CCNCP24863 283 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 SLC5A2P31639 672 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 UGT1A5P35504 534 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 SSR1P43307 286 aaKnown RBP7.07□□□□□ -1.28
VPS41-208ENST00000448833 RGRP47804 291 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 EPHB1P54762 984 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 UBASH3AP57075 661 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 ZFP36L1Q07352 338 aaKnown RBP7.07□□□□□ -1.28
VPS41-208ENST00000448833 ITKQ08881 620 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 TRA2AQ13595 282 aaKnown RBP eCLIP7.07□□□□□ -1.28
VPS41-208ENST00000448833 LRP8Q14114 963 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 HLTFQ14527 1009 aaKnown RBP eCLIP7.07□□□□□ -1.28
VPS41-208ENST00000448833 NFKBIBQ15653 356 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 IFI16Q16666 785 aaKnown RBP7.07□□□□□ -1.28
VPS41-208ENST00000448833 SPECC1LQ69YQ0 1117 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 INO80CQ6PI98 192 aaPredicted RBP7.07□□□□□ -1.28
VPS41-208ENST00000448833 CYP4V2Q6ZWL3 525 aaPredicted RBP7.07□□□□□ -1.28
VPS41-208ENST00000448833 ZNF765Q7L2R6 523 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 SPRED1Q7Z699 444 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 ZSWIM9Q86XI8 627 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 JAMLQ86YT9 394 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 NRSN1Q8IZ57 195 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 CBARPQ8N350 705 aaPredicted RBP7.07□□□□□ -1.28
VPS41-208ENST00000448833 TEX26Q8N6G2 289 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 NPWQ8N729 165 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 AVL9Q8NBF6 648 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 KCTD6Q8NC69 237 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 PLA2G15Q8NCC3 412 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 EXD1Q8NHP7 514 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 ZDHHC1Q8WTX9 485 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 OR1E3Q8WZA6 343 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 DTD2Q96FN9 168 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 PDXPQ96GD0 296 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 PRR11Q96HE9 360 aaPredicted RBP7.07□□□□□ -1.28
VPS41-208ENST00000448833 MCCC1Q96RQ3 725 aaPredicted RBP7.07□□□□□ -1.28
VPS41-208ENST00000448833 TMEM168Q9H0V1 697 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 CARS2Q9HA77 564 aaKnown RBP7.07□□□□□ -1.28
VPS41-208ENST00000448833 NOD2Q9HC29 1040 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 CPNE5Q9HCH3 593 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 FGF22Q9HCT0 170 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 TMEM63CQ9P1W3 806 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 UVRAGQ9P2Y5 699 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 ANAPC7Q9UJX3 599 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 PNMA8BQ9ULN7 279 aaPredicted RBP7.07□□□□□ -1.28
VPS41-208ENST00000448833 CAPN11Q9UMQ6 739 aa7.07□□□□□ -1.28
VPS41-208ENST00000448833 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.07□□□□□ -1.28
VPS41-208ENST00000448833 COL6A6A6NMZ7 2263 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 SMG1Q96Q15 3661 aaKnown RBP7.06□□□□□ -1.28
VPS41-208ENST00000448833 A0A1W2PQM1 296 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 RGSL1A5PLK6 1076 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 GOLGA6CA6NDK9 693 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 GOLGA6BA6NDN3 693 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 A8MX80 341 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 B4DGG1 531 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 HGSO14964 777 aaPredicted RBP7.06□□□□□ -1.28
VPS41-208ENST00000448833 MATN3O15232 486 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 MAP3K7O43318 606 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 NOBOXO60393 691 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 ITGB2P05107 769 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 CYP1A2P05177 515 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 CEACAM5P06731 702 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 TPM1P09493 284 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 GOLGA6DP0CG33 693 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 SKILP12757 684 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 SLC2A4P14672 509 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 MAN1A1P33908 653 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 GARSP41250 739 aaKnown RBP7.06□□□□□ -1.28
VPS41-208ENST00000448833 GPR1P46091 355 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 GPLD1P80108 840 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 CDK3Q00526 305 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 FANCCQ00597 558 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 GALNT2Q10471 571 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 SQSTM1Q13501 440 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 NR1D2Q14995 579 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 IQCB1Q15051 598 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 PAFAH1B3Q15102 231 aaKnown RBP7.06□□□□□ -1.28
VPS41-208ENST00000448833 CNGA3Q16281 694 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 SMTNL2Q2TAL5 461 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 ZSCAN23Q3MJ62 389 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 MAP9Q49MG5 647 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 ODF2Q5BJF6 829 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 DENND2CQ68D51 928 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 RAET1GQ6H3X3 334 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 CAVIN1Q6NZI2 390 aaKnown RBP7.06□□□□□ -1.28
VPS41-208ENST00000448833 ALKBH5Q6P6C2 394 aaKnown RBP7.06□□□□□ -1.28
VPS41-208ENST00000448833 ADAMTSL4Q6UY14 1074 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 ARHGAP36Q6ZRI8 547 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 Q6ZVL8 140 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 USP53Q70EK8 1073 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 ZNF438Q7Z4V0 828 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 HEATR4Q86WZ0 1026 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 ZNF843Q8N446 348 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 Q8N9G6 341 aaPredicted RBP7.06□□□□□ -1.28
VPS41-208ENST00000448833 FAM71BQ8TC56 605 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 CCHCR1Q8TD31 782 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 CTNNBL1Q8WYA6 563 aaPredicted RBP7.06□□□□□ -1.28
VPS41-208ENST00000448833 SH3KBP1Q96B97 665 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 AP2M1Q96CW1 435 aa7.06□□□□□ -1.28
VPS41-208ENST00000448833 MED8Q96G25 268 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms