RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 HSD3B7Q9H2F3 369 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 DPEP2Q9H4A9 486 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 STN1Q9H668 368 aaKnown RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.78□□□□□ -1.16
CD44-211ENST00000442151 TMEM63CQ9P1W3 806 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 ANAPC7Q9UJX3 599 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 COQ6Q9Y2Z9 468 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 PCDHB1Q9Y5F3 818 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 PCDHGA7Q9Y5G6 932 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 U3KQA8 63 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 FASNP49327 2511 aaKnown RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 TDRD6O60522 2096 aaKnown RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 TRAFD1O14545 582 aaPredicted RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 HEXIM1O94992 359 aaKnown RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 CYP1A2P05177 515 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 RARAP10276 462 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 ITIH2P19823 946 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 CCNCP24863 283 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 ITPKBP27987 946 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 MAN1A1P33908 653 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 GPR1P46091 355 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 CLDN6P56747 220 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 DPTQ07507 201 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 SLC10A7Q0GE19 358 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 TRA2AQ13595 282 aaKnown RBP eCLIP7.78□□□□□ -1.16
CD44-211ENST00000442151 CA9Q16790 459 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 FOXR1Q6PIV2 292 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 CCDC81Q6ZN84 652 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 BZW1Q7L1Q6 419 aaKnown RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 CLEC14AQ86T13 490 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 PIM3Q86V86 326 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 CCHCR1Q8TD31 782 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 CTNNBL1Q8WYA6 563 aaPredicted RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 FUBP1Q96AE4 644 aaKnown RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 CCDC74AQ96AQ1 378 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 SH3KBP1Q96B97 665 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 COQ10AQ96MF6 247 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 NUP85Q9BW27 656 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 MAK16Q9BXY0 300 aaKnown RBP7.78□□□□□ -1.16
CD44-211ENST00000442151 ADGRE3Q9BY15 652 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 DEF6Q9H4E7 631 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 RMI1Q9H9A7 625 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 EPB41L5Q9HCM4 733 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 CYP4F12Q9HCS2 524 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 SIRPGQ9P1W8 387 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 LRIT1Q9P2V4 623 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 PPIL1Q9Y3C6 166 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 OR1A2Q9Y585 309 aa7.78□□□□□ -1.16
CD44-211ENST00000442151 ARID1BQ8NFD5 2236 aaPredicted RBP7.77□□□□□ -1.17
CD44-211ENST00000442151 MYLKQ15746 1914 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 PRSS38A1L453 326 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 CDRT15L2A8MXV6 281 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 MATN3O15232 486 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 NVLO15381 856 aaKnown RBP7.77□□□□□ -1.17
CD44-211ENST00000442151 MAFKO60675 156 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 PGLSO95336 258 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 RPLP0P05388 317 aaKnown RBP7.77□□□□□ -1.17
CD44-211ENST00000442151 IVLP07476 585 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 VSIG8P0DPA2 414 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 MYF5P13349 255 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 CCNB1P14635 433 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 TNNT3P45378 269 aaPredicted RBP7.77□□□□□ -1.17
CD44-211ENST00000442151 CCL7P80098 99 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 RALGDSQ12967 914 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 IQCB1Q15051 598 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 PERM1Q5SV97 790 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 CERCAMQ5T4B2 595 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 SPECC1LQ69YQ0 1117 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 JAMLQ86YT9 394 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 TEX26Q8N6G2 289 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 ARFGAP1Q8N6T3 406 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 PCDH19Q8TAB3 1148 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 GPBAR1Q8TDU6 330 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 OR1E3Q8WZA6 343 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 DTD2Q96FN9 168 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 NAP1L5Q96NT1 182 aaPredicted RBP7.77□□□□□ -1.17
CD44-211ENST00000442151 TSGA13Q96PP4 275 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 CCNL2Q96S94 520 aaPredicted RBP7.77□□□□□ -1.17
CD44-211ENST00000442151 PEBP4Q96S96 227 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 ZNF670Q9BS34 389 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 TEX101Q9BY14 249 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 XPO4Q9C0E2 1151 aaKnown RBP7.77□□□□□ -1.17
CD44-211ENST00000442151 BRD8Q9H0E9 1235 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 CDH19Q9H159 772 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 TCEAL2Q9H3H9 227 aaPredicted RBP7.77□□□□□ -1.17
CD44-211ENST00000442151 CARS2Q9HA77 564 aaKnown RBP7.77□□□□□ -1.17
CD44-211ENST00000442151 PCDH18Q9HCL0 1135 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 ASCL3Q9NQ33 180 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 CTTNBP2NLQ9P2B4 639 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 B4GALT6Q9UBX8 382 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 PCDHGC4Q9Y5F7 938 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 SPEGQ15772 3267 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 DOCK9Q9BZ29 2069 aa7.77□□□□□ -1.17
CD44-211ENST00000442151 GOLGA6CA6NDK9 693 aa7.76□□□□□ -1.17
CD44-211ENST00000442151 GOLGA6BA6NDN3 693 aa7.76□□□□□ -1.17
CD44-211ENST00000442151 OR5K4A6NMS3 321 aa7.76□□□□□ -1.17
CD44-211ENST00000442151 CPNE6O95741 557 aa7.76□□□□□ -1.17
CD44-211ENST00000442151 GOLGA6DP0CG33 693 aa7.76□□□□□ -1.17
CD44-211ENST00000442151 CR2P20023 1033 aa7.76□□□□□ -1.17
CD44-211ENST00000442151 ARHGAP25P42331 645 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms