RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 NPAS4Q8IUM7 802 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 CPNE9Q8IYJ1 553 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 DDI1Q8WTU0 396 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 TUBB6Q9BUF5 446 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.92□□□□□ -0.5
PTPRN-204ENST00000423636 MTG2Q9H4K7 406 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 WDR41Q9HAD4 459 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 CATSPERZQ9NTU4 200 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 POLR3BQ9NW08 1133 aaPredicted RBP11.92□□□□□ -0.5
PTPRN-204ENST00000423636 ZNF212Q9UDV6 495 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 RAI2Q9Y5P3 530 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 VPS13AQ96RL7 3174 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 NR5A2O00482 541 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 CACNG3O60359 315 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 NDUFS3O75489 264 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 CKMP06732 381 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 HOXC13P31276 330 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 PRKAA1Q13131 559 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 DNAL1Q4LDG9 190 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 HECTD3Q5T447 861 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 AGAP9Q5VTM2 703 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 AFMIDQ63HM1 303 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 ENDOVQ8N8Q3 282 aaKnown RBP11.92□□□□□ -0.5
PTPRN-204ENST00000423636 OR6Y1Q8NGX8 325 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 GDPD5Q8WTR4 605 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 VPS33AQ96AX1 596 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 MYCBPQ99417 103 aaPredicted RBP11.92□□□□□ -0.5
PTPRN-204ENST00000423636 APOL5Q9BWW9 433 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 STX18Q9P2W9 335 aaKnown RBP11.92□□□□□ -0.5
PTPRN-204ENST00000423636 USP22Q9UPT9 525 aa11.92□□□□□ -0.5
PTPRN-204ENST00000423636 ZBBXA8MT70 800 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 PRAMEF11O60813 436 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 MTX2O75431 263 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 RPL10P27635 214 aaKnown RBP11.91□□□□□ -0.5
PTPRN-204ENST00000423636 MC4RP32245 332 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 DIO3P55073 304 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 AP2B1P63010 937 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 FLOT2Q14254 428 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 FAM26DQ5JW98 314 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 TMCO4Q5TGY1 634 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 DET1Q7L5Y6 550 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 AMIGO2Q86SJ2 522 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 HMGCLL1Q8TB92 370 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 EEF1AKMT1Q8WVE0 214 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 MTFMTQ96DP5 389 aaKnown RBP11.91□□□□□ -0.5
PTPRN-204ENST00000423636 FUBP3Q96I24 572 aaKnown RBP eCLIP11.91□□□□□ -0.5
PTPRN-204ENST00000423636 MRPL57Q9BQC6 102 aaKnown RBP11.91□□□□□ -0.5
PTPRN-204ENST00000423636 ZNF334Q9HCZ1 680 aaPredicted RBP11.91□□□□□ -0.5
PTPRN-204ENST00000423636 HCFC1R1Q9NWW0 138 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 CD84Q9UIB8 345 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 ZMYM5Q9UJ78 669 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 TRAF6Q9Y4K3 522 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 E7ENX8 843 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 CRCPO75575 148 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 TRIM16O95361 564 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 ATP5F1P24539 256 aaPredicted RBP11.91□□□□□ -0.5
PTPRN-204ENST00000423636 EEF1DP29692 281 aaKnown RBP11.91□□□□□ -0.5
PTPRN-204ENST00000423636 CTSOP43234 321 aaPredicted RBP11.91□□□□□ -0.5
PTPRN-204ENST00000423636 TRAF2Q12933 501 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 KLC3Q6P597 504 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 MBOAT1Q6ZNC8 495 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 DNAJB7Q7Z6W7 309 aaPredicted RBP11.91□□□□□ -0.5
PTPRN-204ENST00000423636 NAT16Q8N8M0 369 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 TUBGCP3Q96CW5 907 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 C1orf74Q96LT6 269 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 S100A14Q9HCY8 104 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 RAD54BQ9Y620 910 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 ZNF236Q9UL36 1845 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 FAM149AA5PLN7 773 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 PIP5K1BO14986 540 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 TMCC1O94876 653 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 ETS2P15036 469 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 ATP6V1C1P21283 382 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 HOXD10P28358 340 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 ALDH1A3P47895 512 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 NDST2P52849 883 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 ARF5P84085 180 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 CDC16Q13042 620 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 NAB1Q13506 487 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 FBXW8Q8N3Y1 598 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 KYQ8NBH2 561 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 SPPL2BQ8TCT7 592 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 SLC22A17Q8WUG5 538 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 SKA2Q8WVK7 121 aaPredicted RBP11.91□□□□□ -0.5
PTPRN-204ENST00000423636 ATP6V1E2Q96A05 226 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 CCDC68Q9H2F9 335 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 CLIC5Q9NZA1 410 aa11.91□□□□□ -0.5
PTPRN-204ENST00000423636 A0A1B0GTW7 788 aa11.9□□□□□ -0.5
PTPRN-204ENST00000423636 A0A1W2PRU2 124 aa11.9□□□□□ -0.5
PTPRN-204ENST00000423636 UPK3BL1B0FP48 263 aa11.9□□□□□ -0.5
PTPRN-204ENST00000423636 UPK3BL2E5RIL1 263 aa11.9□□□□□ -0.5
PTPRN-204ENST00000423636 SYN3O14994 580 aa11.9□□□□□ -0.5
PTPRN-204ENST00000423636 UBDO15205 165 aa11.9□□□□□ -0.5
PTPRN-204ENST00000423636 PRLP01236 227 aa11.9□□□□□ -0.5
PTPRN-204ENST00000423636 FAM163BP0C2L3 166 aa11.9□□□□□ -0.5
PTPRN-204ENST00000423636 CSF2RAP15509 400 aa11.9□□□□□ -0.5
PTPRN-204ENST00000423636 HMGA1P17096 107 aaKnown RBP11.9□□□□□ -0.5
PTPRN-204ENST00000423636 CRABP2P29373 138 aa11.9□□□□□ -0.5
PTPRN-204ENST00000423636 PPARGP37231 505 aaPredicted RBP11.9□□□□□ -0.5
PTPRN-204ENST00000423636 CSKP41240 450 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms