RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 DNAJC28Q9NX36 388 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 CREB1P16220 341 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 CR2P20023 1033 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 ADSLP30566 484 aaPredicted RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 AKT1P31749 480 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 HMGCLP35914 325 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 MAGEA12P43365 314 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 RPL14P50914 215 aaKnown RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 RPS6KA2Q15349 733 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 PTPRNQ16849 979 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 LY6G5CQ5SRR4 150 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 NXNQ6DKJ4 435 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 EP400NLQ6ZTU2 488 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 ATP6V1E2Q96A05 226 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 SERPINI1Q99574 410 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 KLHL42Q9P2K6 505 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 LHX3Q9UBR4 397 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 ERVW-1Q9UQF0 538 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 COL4A6Q14031 1691 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 PLXNA3P51805 1871 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 A0A0J9YYE9 177 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 CAPN8A6NHC0 703 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 SUPT3HB4E1H0 165 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 GOLGA8TH3BQL2 631 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 EIF3FO00303 357 aaPredicted RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 SLC22A2O15244 555 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 PHGDHO43175 533 aaKnown RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 UGT1A9O60656 530 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 SUPT3HO75486 399 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 DNAJC8O75937 253 aaPredicted RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 TRBC1P01850 177 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 FTH1P02794 183 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 CALB2P22676 271 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 ARF5P84085 180 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 MPP1Q00013 466 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 CDC16Q13042 620 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 STARD3Q14849 445 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 ERP27Q96DN0 273 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 COPS8Q99627 209 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 AARSD1Q9BTE6 412 aaKnown RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 C1QTNF7Q9BXJ2 289 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 IGFLR1Q9H665 355 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 FBRSQ9HAH7 460 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 UGT1A7Q9HAW7 530 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 UGT1A10Q9HAW8 530 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 UGT1A8Q9HAW9 530 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 RIC8BQ9NVN3 520 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 FNDC3AQ9Y2H6 1198 aaKnown RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 HCFC2Q9Y5Z7 792 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 MYO16Q9Y6X6 1858 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 H7C0S8 307 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 SYNCRIPO60506 623 aaKnown RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 DIAPH2O60879 1101 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 ZMPSTE24O75844 475 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 MLYCDO95822 493 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 ALDOAP04075 364 aaKnown RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 CBSLP0DN79 551 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 MSH3P20585 1137 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 FMO4P31512 558 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 VIPR1P32241 457 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 CBSP35520 551 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 ETV4P43268 484 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 PLOD1Q02809 727 aaPredicted RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 ACTN3Q08043 901 aaPredicted RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 ZNF77Q15935 545 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 ANKS6Q68DC2 871 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 CMC1Q7Z7K0 106 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 FAM9CQ8IZT9 166 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 TCAIMQ8N3R3 496 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 FBXO39Q8N4B4 442 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 KCTD4Q8WVF5 259 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 MMADHCQ9H3L0 296 aaPredicted RBP8.38□□□□□ -1.07
USP54-203ENST00000418501 CD274Q9NZQ7 290 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 IL36AQ9UHA7 158 aa8.38□□□□□ -1.07
USP54-203ENST00000418501 PATJQ8NI35 1801 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 TBC1D3BA6NDS4 549 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 HOXC11O43248 304 aaPredicted RBP8.37□□□□□ -1.07
USP54-203ENST00000418501 LDB2O43679 373 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 FSBPO95073 299 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 RPS3P23396 243 aaKnown RBP eCLIP8.37□□□□□ -1.07
USP54-203ENST00000418501 FOXN2P32314 431 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 NSG1P42857 185 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 ARCN1P48444 511 aaKnown RBP8.37□□□□□ -1.07
USP54-203ENST00000418501 TAS2R39P59534 338 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 DHCR24Q15392 516 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 TTC31Q49AM3 519 aaPredicted RBP8.37□□□□□ -1.07
USP54-203ENST00000418501 GET4Q7L5D6 327 aaPredicted RBP8.37□□□□□ -1.07
USP54-203ENST00000418501 UBE2Q1Q7Z7E8 422 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 STON2Q8WXE9 905 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 KCNJ9Q92806 393 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 MRPL38Q96DV4 380 aaKnown RBP8.37□□□□□ -1.07
USP54-203ENST00000418501 CCDC28BQ9BUN5 200 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 LRRC3Q9BY71 257 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 FAM126AQ9BYI3 521 aaPredicted RBP8.37□□□□□ -1.07
USP54-203ENST00000418501 SARS2Q9NP81 518 aaKnown RBP8.37□□□□□ -1.07
USP54-203ENST00000418501 POLR3BQ9NW08 1133 aaPredicted RBP8.37□□□□□ -1.07
USP54-203ENST00000418501 OXSMQ9NWU1 459 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 PLK2Q9NYY3 685 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 XPR1Q9UBH6 696 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 HEY2Q9UBP5 337 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms