RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 B4GALT6Q9UBX8 382 aa6.39□□□□□ -1.39
USP54-202ENST00000413442 APOBEC3BQ9UH17 382 aaKnown RBP6.39□□□□□ -1.39
USP54-202ENST00000413442 FAM153AQ9UHL3 310 aa6.39□□□□□ -1.39
USP54-202ENST00000413442 ZKSCAN5Q9Y2L8 839 aa6.39□□□□□ -1.39
USP54-202ENST00000413442 DNMT3AQ9Y6K1 912 aaPredicted RBP6.39□□□□□ -1.39
USP54-202ENST00000413442 SLCO1B1Q9Y6L6 691 aa6.39□□□□□ -1.39
USP54-202ENST00000413442 KNL1Q8NG31 2342 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 C5orf60A6NFR6 353 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 SOWAHDA6NJG2 315 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 ERI2A8K979 691 aaKnown RBP6.38□□□□□ -1.39
USP54-202ENST00000413442 YY2O15391 372 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 SIGLEC6O43699 453 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 NUDT21O43809 227 aaKnown RBP6.38□□□□□ -1.39
USP54-202ENST00000413442 PRLP01236 227 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 HLA-DQB2P05538 268 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 PTMAP06454 111 aaKnown RBP6.38□□□□□ -1.39
USP54-202ENST00000413442 PDHA1P08559 390 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 CCDC175P0C221 793 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 GIMD1P0DJR0 217 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 PYGMP11217 842 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 GLB1P16278 677 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 GJC1P36383 396 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 GPR3P46089 330 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 GPR1P46091 355 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 SPINT3P49223 89 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 ACADVLP49748 655 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 CLCNKAP51800 687 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 STC1P52823 247 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 MAXP61244 160 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 SKOR1P84550 965 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 ILF3Q12906 894 aaKnown RBP eCLIP6.38□□□□□ -1.399e-9■■■■■ 29.8
USP54-202ENST00000413442 EIF2B5Q13144 721 aaKnown RBP6.38□□□□□ -1.39
USP54-202ENST00000413442 EIF3IQ13347 325 aaKnown RBP6.38□□□□□ -1.39
USP54-202ENST00000413442 SQSTM1Q13501 440 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 RTP5Q14D33 572 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 NOMO1Q15155 1222 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 NR0B2Q15466 257 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 CNGA3Q16281 694 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 PRRT3Q5FWE3 981 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 RAD9BQ6WBX8 426 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 Q6ZVL8 140 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 ZSWIM9Q86XI8 627 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 GATAD2AQ86YP4 633 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 TMEM139Q8IV31 216 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 LRRC8AQ8IWT6 810 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 TP53INP2Q8IXH6 220 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 CHCHD4Q8N4Q1 142 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 TRIM58Q8NG06 486 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 GPBAR1Q8TDU6 330 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 LMX1AQ8TE12 382 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 HEXDCQ8WVB3 486 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 FUBP1Q96AE4 644 aaKnown RBP6.38□□□□□ -1.39
USP54-202ENST00000413442 SH3KBP1Q96B97 665 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 HES6Q96HZ4 224 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 HIC2Q96JB3 615 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 APOLD1Q96LR9 279 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 DEPDC7Q96QD5 511 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 ARNT2Q9HBZ2 717 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 TRIM39Q9HCM9 518 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 MBNL1Q9NR56 388 aaKnown RBP6.38□□□□□ -1.39
USP54-202ENST00000413442 KLQ9UEF7 1012 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 APPL1Q9UKG1 709 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 PADI4Q9UM07 663 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 CHKBQ9Y259 395 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 SLC17A4Q9Y2C5 497 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 BTBD3Q9Y2F9 522 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 ADGRG1Q9Y653 693 aa6.38□□□□□ -1.39
USP54-202ENST00000413442 ARID1BQ8NFD5 2236 aaPredicted RBP6.38□□□□□ -1.39
USP54-202ENST00000413442 DCHS1Q96JQ0 3298 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 C1orf232A0A0U1RR37 186 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 NPIPB15A6NHN6 443 aaPredicted RBP6.37□□□□□ -1.39
USP54-202ENST00000413442 C2orf81A6NN90 581 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 H7C0C1 242 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 KCNK1O00180 336 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 TRIM38O00635 465 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 VEGFDO43915 354 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 FGF1P05230 155 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 CEACAM5P06731 702 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 MMP2P08253 660 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 RBP3P10745 1247 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 ITIH2P19823 946 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 PTPN3P26045 913 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 ACTN2P35609 894 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 HADHAP40939 763 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 CD86P42081 329 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 ATP5OP48047 213 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 CDK3Q00526 305 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 DSC2Q02487 901 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 NIPAL4Q0D2K0 466 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 ITGA9Q13797 1035 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 CDKN3Q16667 212 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 QPCTQ16769 361 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 PARP6Q2NL67 630 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 P3H1Q32P28 736 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 PRAMEF14Q5SWL7 426 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 LRRC66Q68CR7 880 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 DRICH1Q6PGQ1 229 aaPredicted RBP6.37□□□□□ -1.39
USP54-202ENST00000413442 UNQ6494/PRO21346Q6UXR6 183 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 RANBP10Q6VN20 620 aa6.37□□□□□ -1.39
USP54-202ENST00000413442 LINC00523Q86TU6 105 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms