RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 SLFN11Q7Z7L1 901 aa16.65■□□□□ 0.26
CHMP3-203ENST00000409225 CCDC13Q8IYE1 715 aa16.65■□□□□ 0.26
CHMP3-203ENST00000409225 EFCAB3Q8N7B9 438 aa16.65■□□□□ 0.26
CHMP3-203ENST00000409225 TSEN2Q8NCE0 465 aaKnown RBP16.65■□□□□ 0.26
CHMP3-203ENST00000409225 SSC4DQ8WTU2 575 aa16.65■□□□□ 0.26
CHMP3-203ENST00000409225 CENPIQ92674 756 aaPredicted RBP16.65■□□□□ 0.26
CHMP3-203ENST00000409225 RNF31Q96EP0 1072 aa16.65■□□□□ 0.26
CHMP3-203ENST00000409225 COQ10AQ96MF6 247 aa16.65■□□□□ 0.26
CHMP3-203ENST00000409225 SLC38A3Q99624 504 aa16.65■□□□□ 0.26
CHMP3-203ENST00000409225 ZPBPQ9BS86 351 aa16.65■□□□□ 0.26
CHMP3-203ENST00000409225 TEX101Q9BY14 249 aa16.65■□□□□ 0.26
CHMP3-203ENST00000409225 TRIT1Q9H3H1 467 aaKnown RBP16.65■□□□□ 0.26
CHMP3-203ENST00000409225 PDFQ9HBH1 243 aa16.65■□□□□ 0.26
CHMP3-203ENST00000409225 TMEM184BQ9Y519 407 aaPredicted RBP16.65■□□□□ 0.26
CHMP3-203ENST00000409225 FHOD1Q9Y613 1164 aa16.65■□□□□ 0.26
CHMP3-203ENST00000409225 GOLGA6CA6NDK9 693 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 GOLGA6BA6NDN3 693 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 GOLGA6DP0CG33 693 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 F8A1P23610 371 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 ERCC5P28715 1186 aaPredicted RBP16.64■□□□□ 0.25
CHMP3-203ENST00000409225 STAT5AP42229 794 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 POLR2LP62875 67 aaKnown RBP16.64■□□□□ 0.25
CHMP3-203ENST00000409225 PEX6Q13608 980 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 CRTC2Q53ET0 693 aaPredicted RBP16.64■□□□□ 0.25
CHMP3-203ENST00000409225 DOK6Q6PKX4 331 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 UMODL1-AS1Q8N2C9 162 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 OR10G6Q8NH81 332 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 ECHDC3Q96DC8 303 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 CELF6Q96J87 481 aaKnown RBP16.64■□□□□ 0.25
CHMP3-203ENST00000409225 C11orf70Q9BRQ4 267 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 CATSPERBQ9H7T0 1116 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 GOLGA6AQ9NYA3 693 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 PDP2Q9P2J9 529 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 B4GALT6Q9UBX8 382 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 RWDD2AQ9UIY3 292 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 RPS6KL1Q9Y6S9 549 aa16.64■□□□□ 0.25
CHMP3-203ENST00000409225 TTLL8A6PVC2 850 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 WASH4PA8MWX3 477 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 PRAMEF11O60813 436 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 SEMA7AO75326 666 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 DLGAP3O95886 979 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 RNF224P0DH78 156 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 ATXN8OSP0DMR3 200 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 NOP2P46087 812 aaKnown RBP16.63■□□□□ 0.25
CHMP3-203ENST00000409225 CSNK1DP48730 415 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 CDK3Q00526 305 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 DPY19L2P1Q6NXN4 242 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 SCYL2Q6P3W7 929 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 ARHGAP22Q7Z5H3 698 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 ESX1Q8N693 406 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 GALNT11Q8NCW6 608 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 SLC20A1Q8WUM9 679 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 FBXO8Q9NRD0 319 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 PCDHB3Q9Y5E6 796 aa16.63■□□□□ 0.25
CHMP3-203ENST00000409225 CACNA1DQ01668 2161 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 PALMO75781 387 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 IVLP07476 585 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 FURINP09958 794 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 DLSTP36957 453 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 ETV3P41162 512 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 ERV3-1Q14264 604 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 CNGA3Q16281 694 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 ZNF787Q6DD87 383 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 RAET1GQ6H3X3 334 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 SLC30A5Q8TAD4 765 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 CPT1CQ8TCG5 803 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 EPS8L1Q8TE68 723 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 SLC37A2Q8TED4 501 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 NCSTNQ92542 709 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 CINPQ9BW66 212 aaPredicted RBP16.62■□□□□ 0.25
CHMP3-203ENST00000409225 LRRC19Q9H756 370 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 KLHL3Q9UH77 587 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 TLK1Q9UKI8 766 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 SLC17A4Q9Y2C5 497 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 ITPR2Q14571 2701 aa16.62■□□□□ 0.25
CHMP3-203ENST00000409225 TRAFD1O14545 582 aaPredicted RBP16.61■□□□□ 0.25
CHMP3-203ENST00000409225 POLR1CO15160 346 aaPredicted RBP16.61■□□□□ 0.25
CHMP3-203ENST00000409225 RFPL1O75677 317 aa16.61■□□□□ 0.25
CHMP3-203ENST00000409225 MAP3K6O95382 1288 aa16.61■□□□□ 0.25
CHMP3-203ENST00000409225 PDGFAP04085 211 aa16.61■□□□□ 0.25
CHMP3-203ENST00000409225 MMP8P22894 467 aa16.61■□□□□ 0.25
CHMP3-203ENST00000409225 MAPK9P45984 424 aa16.61■□□□□ 0.25
CHMP3-203ENST00000409225 PAPOLAP51003 745 aaKnown RBP16.61■□□□□ 0.25
CHMP3-203ENST00000409225 SCNN1BP51168 640 aa16.61■□□□□ 0.25
CHMP3-203ENST00000409225 WDR74Q6RFH5 385 aaPredicted RBP16.61■□□□□ 0.25
CHMP3-203ENST00000409225 TMEM135Q86UB9 458 aa16.61■□□□□ 0.25
CHMP3-203ENST00000409225 NSMCE3Q96MG7 304 aa16.61■□□□□ 0.25
CHMP3-203ENST00000409225 OR2M4Q96R27 311 aa16.61■□□□□ 0.25
CHMP3-203ENST00000409225 POLHQ9Y253 713 aa16.61■□□□□ 0.25
CHMP3-203ENST00000409225 TMEM98Q9Y2Y6 226 aa16.61■□□□□ 0.25
CHMP3-203ENST00000409225 RP1L1Q8IWN7 2480 aaPredicted RBP16.6■□□□□ 0.25
CHMP3-203ENST00000409225 CDC14CA4D256 554 aa16.6■□□□□ 0.25
CHMP3-203ENST00000409225 FGF10O15520 208 aaPredicted RBP16.6■□□□□ 0.25
CHMP3-203ENST00000409225 KATNA1O75449 491 aa16.6■□□□□ 0.25
CHMP3-203ENST00000409225 KRT3P12035 628 aa16.6■□□□□ 0.25
CHMP3-203ENST00000409225 GPD1P21695 349 aa16.6■□□□□ 0.25
CHMP3-203ENST00000409225 COL8A1P27658 744 aa16.6■□□□□ 0.25
CHMP3-203ENST00000409225 VIPR1P32241 457 aa16.6■□□□□ 0.25
CHMP3-203ENST00000409225 RFC1P35251 1148 aaPredicted RBP16.6■□□□□ 0.25
CHMP3-203ENST00000409225 FASLGP48023 281 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms