RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 HS3ST5Q8IZT8 346 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 EFHD1Q9BUP0 239 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 EXD2Q9NVH0 621 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 INTS7Q9NVH2 962 aaKnown RBP20.97■□□□□ 0.95
CTCF-202ENST00000401394 POLR3BQ9NW08 1133 aaPredicted RBP20.97■□□□□ 0.95
CTCF-202ENST00000401394 FNDC3AQ9Y2H6 1198 aaKnown RBP20.97■□□□□ 0.95
CTCF-202ENST00000401394 DGKBQ9Y6T7 804 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 PAGE1O75459 146 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 HADHAP40939 763 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 BMXP51813 675 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 FRG1Q14331 258 aaKnown RBP20.97■□□□□ 0.95
CTCF-202ENST00000401394 AGAP9Q5VTM2 703 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 ZNF354CQ86Y25 554 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 RBM12BQ8IXT5 1001 aaKnown RBP20.97■□□□□ 0.95
CTCF-202ENST00000401394 KCTD13Q8WZ19 329 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 GAD1Q99259 594 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 GPATCH1Q9BRR8 931 aaKnown RBP20.97■□□□□ 0.95
CTCF-202ENST00000401394 VWA7Q9Y334 891 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 ACTL7AQ9Y615 435 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 ASPDHA6ND91 283 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 ENPP3O14638 875 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 TCF3P15923 654 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 CCT8P50990 548 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 DNAJB13P59910 316 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 SNX17Q15036 470 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 CYBRD1Q53TN4 286 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 RANBP10Q6VN20 620 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 LINC00523Q86TU6 105 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 ITIH5Q86UX2 942 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 TWIST2Q8WVJ9 160 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 TBATAQ96M53 351 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 AAR2Q9Y312 384 aaKnown RBP20.97■□□□□ 0.95
CTCF-202ENST00000401394 DERAQ9Y315 318 aa20.97■□□□□ 0.95
CTCF-202ENST00000401394 TSC2P49815 1807 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 FAM155AB1AL88 458 aaPredicted RBP20.96■□□□□ 0.95
CTCF-202ENST00000401394 ANGPT2O15123 496 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 STX1BP61266 288 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 POU4F1Q01851 419 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 SEMA3AQ14563 771 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 FAM45BPQ6NSW5 357 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 CAMK1DQ8IU85 385 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 OR6J1Q8NGC5 347 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 FAM45AQ8TCE6 357 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 HM13Q8TCT9 377 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 UBXN10Q96LJ8 280 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 MUS81Q96NY9 551 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 ZFYVE28Q9HCC9 887 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 LOC285556D6RIA3 1793 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 SMIM10L2AP0DMW4 78 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 SMIM10L2BP0DMW5 78 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 WARSP23381 471 aaKnown RBP20.96■□□□□ 0.95
CTCF-202ENST00000401394 MYF6P23409 242 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 FASP25445 335 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 SLC10A7Q0GE19 358 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 ZNF549Q6P9A3 640 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 SLC15A4Q8N697 577 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 IRGQQ8WZA9 623 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 LRRC58Q96CX6 371 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 FCRL2Q96LA5 508 aaPredicted RBP20.96■□□□□ 0.95
CTCF-202ENST00000401394 FCRL5Q96RD9 977 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 HIPK3Q9H422 1215 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 TBC1D13Q9NVG8 400 aa20.96■□□□□ 0.95
CTCF-202ENST00000401394 A0A087X1B8 175 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 PM20D1Q6GTS8 502 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 PIWIL3Q7Z3Z3 882 aaKnown RBP20.95■□□□□ 0.94
CTCF-202ENST00000401394 BIRC8Q96P09 236 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 CYP2S1Q96SQ9 504 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 EML4Q9HC35 981 aaKnown RBP20.95■□□□□ 0.94
CTCF-202ENST00000401394 ARMC1Q9NVT9 282 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 UTS2RQ9UKP6 389 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 HAPLN1P10915 354 aaPredicted RBP20.95■□□□□ 0.94
CTCF-202ENST00000401394 IL7RP16871 459 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 IMPDH1P20839 514 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 SHMT2P34897 504 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 GSK3BP49841 420 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 AGTR2P50052 363 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 UFM1P61960 85 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 TUBA4AP68366 448 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 MAPRE2Q15555 327 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 SLC9A7Q96T83 725 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 CSF3RQ99062 836 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 FANCEQ9HB96 536 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 ARL5AQ9Y689 179 aa20.95■□□□□ 0.94
CTCF-202ENST00000401394 TSPAN3O60637 253 aa20.94■□□□□ 0.94
CTCF-202ENST00000401394 HSPA8P11142 646 aaKnown RBP20.94■□□□□ 0.94
CTCF-202ENST00000401394 PSMA4P25789 261 aaKnown RBP20.94■□□□□ 0.94
CTCF-202ENST00000401394 HK2P52789 917 aa20.94■□□□□ 0.94
CTCF-202ENST00000401394 NUP107P57740 925 aa20.94■□□□□ 0.94
CTCF-202ENST00000401394 TIAL1Q01085 375 aaKnown RBP eCLIP20.94■□□□□ 0.94
CTCF-202ENST00000401394 RPS6KA2Q15349 733 aa20.94■□□□□ 0.94
CTCF-202ENST00000401394 ANKRD26P1Q6NSI1 321 aa20.94■□□□□ 0.94
CTCF-202ENST00000401394 LIMS2Q7Z4I7 341 aa20.94■□□□□ 0.94
CTCF-202ENST00000401394 CIR1Q86X95 450 aaPredicted RBP20.94■□□□□ 0.94
CTCF-202ENST00000401394 PLEKHA8Q96JA3 519 aa20.94■□□□□ 0.94
CTCF-202ENST00000401394 SLC30A3Q99726 388 aa20.94■□□□□ 0.94
CTCF-202ENST00000401394 PCDH12Q9NPG4 1184 aa20.94■□□□□ 0.94
CTCF-202ENST00000401394 NSMCE4AQ9NXX6 385 aa20.94■□□□□ 0.94
CTCF-202ENST00000401394 AASSQ9UDR5 926 aa20.94■□□□□ 0.94
CTCF-202ENST00000401394 POLG2Q9UHN1 485 aa20.94■□□□□ 0.94
CTCF-202ENST00000401394 FAM50BQ9Y247 325 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms