RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 GPR34Q9UPC5 381 aa13.41□□□□□ -0.26
VCX3A-202ENST00000398729 PPIL1Q9Y3C6 166 aa13.41□□□□□ -0.26
VCX3A-202ENST00000398729 PCDHB1Q9Y5F3 818 aa13.41□□□□□ -0.26
VCX3A-202ENST00000398729 GOLGA6CA6NDK9 693 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 GOLGA6BA6NDN3 693 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 J3QKU1 62 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 FZD6O60353 706 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 USP12O75317 370 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 PDHA1P08559 390 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 GOLGA6DP0CG33 693 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 ACTN2P35609 894 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 ETV3P41162 512 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 SLC1A1P43005 524 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 CXADRP78310 365 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 SLC10A2Q12908 348 aaPredicted RBP13.4□□□□□ -0.26
VCX3A-202ENST00000398729 TBX2Q13207 712 aaPredicted RBP13.4□□□□□ -0.26
VCX3A-202ENST00000398729 ISXQ2M1V0 245 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 LRRC38Q5VT99 294 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 SARM1Q6SZW1 724 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 CRTC1Q6UUV9 634 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 RBM44Q6ZP01 1051 aaKnown RBP13.4□□□□□ -0.26
VCX3A-202ENST00000398729 NYAP1Q6ZVC0 841 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 Q6ZVL8 140 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 TAF8Q7Z7C8 310 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 TSPAN33Q86UF1 283 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 CCDC13Q8IYE1 715 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 PELI3Q8N2H9 469 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 CBARPQ8N350 705 aaPredicted RBP13.4□□□□□ -0.26
VCX3A-202ENST00000398729 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.4□□□□□ -0.26
VCX3A-202ENST00000398729 KYQ8NBH2 561 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 CCDC3Q9BQI4 270 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 MAK16Q9BXY0 300 aaKnown RBP13.4□□□□□ -0.26
VCX3A-202ENST00000398729 TEX101Q9BY14 249 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 TRIM5Q9C035 493 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 SEMA4CQ9C0C4 833 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 CYP4F12Q9HCS2 524 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 MRPL40Q9NQ50 206 aaKnown RBP13.4□□□□□ -0.26
VCX3A-202ENST00000398729 GOLGA6AQ9NYA3 693 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 HEY1Q9Y5J3 304 aa13.4□□□□□ -0.26
VCX3A-202ENST00000398729 A0A0J9YYE9 177 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 PRSS38A1L453 326 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 APOL1O14791 398 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 TCEA3O75764 348 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 TRBC1P01850 177 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 KRT1P04264 644 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 HLA-DQB2P05538 268 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 ZFXP17010 805 aaPredicted RBP13.39□□□□□ -0.27
VCX3A-202ENST00000398729 ZNF30P17039 623 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 TEAD1P28347 426 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 GABREP78334 506 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 CDK3Q00526 305 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 PPIDQ08752 370 aaKnown RBP13.39□□□□□ -0.27
VCX3A-202ENST00000398729 PTPRRQ15256 657 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 LRRC66Q68CR7 880 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 KCTD16Q68DU8 428 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 RAET1GQ6H3X3 334 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 HEATR4Q86WZ0 1026 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 RHOT1Q8IXI2 618 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 LSMEM2Q8N112 164 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 PLD5Q8N7P1 536 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 FAM46DQ8NEK8 389 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 OR6C4Q8NGE1 309 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 ARRDC2Q8TBH0 407 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 LRRN4Q8WUT4 740 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 HIC2Q96JB3 615 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 TDRD1Q9BXT4 1180 aaKnown RBP13.39□□□□□ -0.27
VCX3A-202ENST00000398729 TMEM168Q9H0V1 697 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 SYNDIG1Q9H7V2 258 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 DDX56Q9NY93 547 aaKnown RBP13.39□□□□□ -0.27
VCX3A-202ENST00000398729 DNPEPQ9ULA0 475 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 CHKBQ9Y259 395 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 PTPN13Q12923 2485 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 BOD1L1Q8NFC6 3051 aa13.39□□□□□ -0.27
VCX3A-202ENST00000398729 C3orf70A6NLC5 250 aaPredicted RBP13.38□□□□□ -0.27
VCX3A-202ENST00000398729 ERVH48-1M5A8F1 160 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 KCNK1O00180 336 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 SPOPO43791 374 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 JCHAINP01591 159 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 MPOP05164 745 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 GPR1P46091 355 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 LSSP48449 732 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 RPL26P61254 145 aaKnown RBP13.38□□□□□ -0.27
VCX3A-202ENST00000398729 DPTQ07507 201 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 NIPAL4Q0D2K0 466 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 SPIDRQ14159 915 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 PDK1Q15118 436 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 TCEAL1Q15170 157 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 SLC9A4Q6AI14 798 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 TECPR1Q7Z6L1 1165 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 CCDC74AQ96AQ1 378 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 LGMNQ99538 433 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 POLR1BQ9H9Y6 1135 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 CARS2Q9HA77 564 aaKnown RBP13.38□□□□□ -0.27
VCX3A-202ENST00000398729 PCDH9Q9HC56 1237 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 RPL26L1Q9UNX3 145 aaKnown RBP13.38□□□□□ -0.27
VCX3A-202ENST00000398729 RP1P56715 2156 aa13.38□□□□□ -0.27
VCX3A-202ENST00000398729 FLNCQ14315 2725 aa13.37□□□□□ -0.27
VCX3A-202ENST00000398729 A0A0U1RQS6 177 aa13.37□□□□□ -0.27
VCX3A-202ENST00000398729 CAPN8A6NHC0 703 aa13.37□□□□□ -0.27
VCX3A-202ENST00000398729 PPP1R12AO14974 1030 aaPredicted RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms