RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 PAGE2Q7Z2X7 111 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 CUZD1Q86UP6 607 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 KIAA0319LQ8IZA0 1049 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 SPAG16Q8N0X2 631 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 LRRC52Q8N7C0 313 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 ZBTB8BQ8NAP8 495 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 OR52K2Q8NGK3 314 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 UROC1Q96N76 676 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 CPA4Q9UI42 421 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 SLC9A8Q9Y2E8 581 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 PHC1P78364 1004 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 TRIM40Q6P9F5 258 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 R3HCC1LQ7Z5L2 792 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 SPATA19Q7Z5L4 167 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 HDAC2Q92769 488 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 P2RY11Q96G91 374 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 PANX1Q96RD7 426 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 SSU72Q9NP77 194 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 DNAJC28Q9NX36 388 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 METTL21EPA6NDL7 271 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 CCRL2O00421 344 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 RFXANKO14593 260 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 PLOD3O60568 738 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 PRG2P13727 222 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 COPZ1P61923 177 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 IL18R1Q13478 541 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 SLC1A5Q15758 541 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 SCIMPQ6UWF3 145 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 STRADAQ7RTN6 431 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 SAPCD2Q86UD0 394 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 COMMD2Q86X83 199 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 HAVCR1Q96D42 359 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 OR52E6Q96RD3 313 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 PCDHB18PQ96TA0 734 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 NPAS2Q99743 824 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 SLC39A8Q9C0K1 460 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 PNPLA8Q9NP80 782 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 RGS17Q9UGC6 210 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 EDARQ9UNE0 448 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 CAPN8A6NHC0 703 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 SMIM22K7EJ46 135 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 WNT10BO00744 389 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 LRIG2O94898 1065 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 CES1P23141 567 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 BIKQ13323 160 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 TIGD2Q4W5G0 525 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 ANXA8L1Q5VT79 327 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 CAMKK1Q8N5S9 505 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 OR2T12Q8NG77 320 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 MCFD2Q8NI22 146 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 KREMEN1Q96MU8 473 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 GBA2Q9HCG7 927 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 RCOR3Q9P2K3 495 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 LGALS13Q9UHV8 139 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 LINC00032P0C843 101 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 CAPGP40121 348 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 MRPS5P82675 430 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 CDK18Q07002 472 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 BLMHQ13867 455 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 MSANTD1Q6ZTZ1 278 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 METTL3Q86U44 580 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 RIOX2Q8IUF8 465 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 C12orf50Q8NA57 414 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 SMYD1Q8NB12 490 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 FAR1Q8WVX9 515 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 TNFRSF25Q93038 417 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 SLC47A1Q96FL8 570 aa10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 MRPS7Q9Y2R9 242 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-203ENST00000396595 NRCAMQ92823 1304 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 A0A0J9YYE9 177 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 PDHXO00330 501 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 ACADMP11310 421 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 TLX1P31314 330 aaPredicted RBP10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 TNFSF9P41273 254 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 CCR3P51677 355 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 PRKAG1P54619 331 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 WNT3AP56704 352 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 SPIBQ01892 262 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 PTP4A2Q12974 167 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 MTX3Q5HYI7 312 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 ZFPM1Q8IX07 1006 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 OR8H3Q8N146 312 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 FITM2Q8N6M3 262 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 C4orf32Q8N8J7 132 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 HDAC10Q969S8 669 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 TEFMQ96QE5 360 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 PURBQ96QR8 312 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 C1QTNF7Q9BXJ2 289 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 RACGAP1Q9H0H5 632 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 CDH22Q9UJ99 828 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 DNMT3LQ9UJW3 386 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 MRPL42Q9Y6G3 142 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 KIF20BQ96Q89 1820 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 G3V2T6 193 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 TIPRLO75663 272 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 TCF4P15884 667 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 EPORP19235 508 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 MYL9P24844 172 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 MPSTP25325 297 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 PPP1R15BQ5SWA1 713 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms