RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 CHRDL2Q6WN34 429 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 DNAJA4Q8WW22 397 aaPredicted RBP12.47□□□□□ -0.41
VPS13A-204ENST00000376634 AP2M1Q96CW1 435 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 EQTNQ9NQ60 294 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 ZNF221Q9UK13 617 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 SLC25A14O95258 325 aaPredicted RBP12.47□□□□□ -0.41
VPS13A-204ENST00000376634 PRH1P02810 166 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 ABL2P42684 1182 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 ZNF697Q5TEC3 545 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 KIAA0895Q8NCT3 520 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 FBXO6Q9NRD1 293 aaPredicted RBP12.47□□□□□ -0.41
VPS13A-204ENST00000376634 PARP4Q9UKK3 1724 aaKnown RBP12.47□□□□□ -0.41
VPS13A-204ENST00000376634 KCNE2Q9Y6J6 123 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 KDELR1P24390 212 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 PSEN2P49810 448 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 TAPT1Q6NXT6 567 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 WDR59Q6PJI9 974 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 FAM151BQ6UXP7 276 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 CLHC1Q8NHS4 586 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 RFKQ969G6 155 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 ZC3H10Q96K80 434 aaKnown RBP12.47□□□□□ -0.41
VPS13A-204ENST00000376634 FERD3LQ96RJ6 166 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 ABHD16BQ9H3Z7 469 aa12.47□□□□□ -0.41
VPS13A-204ENST00000376634 POLR3HQ9Y535 204 aaPredicted RBP12.47□□□□□ -0.41
VPS13A-204ENST00000376634 UGT2B11O75310 529 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 SERPINA6P08185 405 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 AKR1A1P14550 325 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 PPP4CP60510 307 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 PCDH20Q8N6Y1 951 aaKnown RBP12.46□□□□□ -0.41
VPS13A-204ENST00000376634 ARL10Q8N8L6 244 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 CHMP1AQ9HD42 196 aaPredicted RBP12.46□□□□□ -0.41
VPS13A-204ENST00000376634 TRIM64A6NGJ6 449 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 ATF4P18848 351 aaPredicted RBP12.46□□□□□ -0.41
VPS13A-204ENST00000376634 ITIH1P19827 911 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 IGFBP4P22692 258 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 NOS2P35228 1153 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 FRRS1Q6ZNA5 592 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 PTGR2Q8N8N7 351 aaPredicted RBP12.46□□□□□ -0.41
VPS13A-204ENST00000376634 ACMSDQ8TDX5 336 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 CIDEBQ9UHD4 219 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 KLF15Q9UIH9 416 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 CLEC4AQ9UMR7 237 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 ITPKBP27987 946 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 MASP1P48740 699 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 TROAPQ12815 778 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 MAMLD1Q13495 774 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 DEFB106AQ8N104 65 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 PARP8Q8N3A8 854 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 LINGO1Q96FE5 620 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 SYNPO2Q9UMS6 1093 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 PCDHB9Q9Y5E1 797 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 VWDEQ8N2E2 1590 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 ATF6P18850 670 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 LPOP22079 712 aaPredicted RBP12.46□□□□□ -0.41
VPS13A-204ENST00000376634 GRM3Q14832 879 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 QSOX2Q6ZRP7 698 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 C11orf24Q96F05 449 aaPredicted RBP12.46□□□□□ -0.41
VPS13A-204ENST00000376634 RBM4BQ9BQ04 359 aaKnown RBP12.46□□□□□ -0.41
VPS13A-204ENST00000376634 RBM4Q9BWF3 364 aaKnown RBP12.46□□□□□ -0.41
VPS13A-204ENST00000376634 ACE2Q9BYF1 805 aaPredicted RBP12.46□□□□□ -0.41
VPS13A-204ENST00000376634 ANKZF1Q9H8Y5 726 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 FAM172BPA6NC97 362 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 CHKAP35790 457 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 PPP3R1P63098 170 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 ZCCHC12Q6PEW1 402 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 SLC30A10Q6XR72 485 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 RBM44Q6ZP01 1051 aaKnown RBP12.46□□□□□ -0.41
VPS13A-204ENST00000376634 ZNF433Q8N7K0 673 aaPredicted RBP12.46□□□□□ -0.41
VPS13A-204ENST00000376634 DNASE1L2Q92874 299 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 MBOAT7Q96N66 472 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 GULP1Q9UBP9 304 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 COPS7AQ9UBW8 275 aa12.46□□□□□ -0.41
VPS13A-204ENST00000376634 MRPS23Q9Y3D9 190 aaKnown RBP12.46□□□□□ -0.41
VPS13A-204ENST00000376634 ATG13O75143 517 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 PAPSS2O95340 614 aaPredicted RBP12.46□□□□□ -0.42
VPS13A-204ENST00000376634 NTSR2O95665 410 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 EIF4BP23588 611 aaKnown RBP12.46□□□□□ -0.42
VPS13A-204ENST00000376634 ZPBP2Q6X784 338 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 UPB1Q9UBR1 384 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 GRIP1Q9Y3R0 1128 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 MANSC4A6NHS7 340 aaPredicted RBP12.46□□□□□ -0.42
VPS13A-204ENST00000376634 ACKR2O00590 384 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 NOS1APO75052 506 aaPredicted RBP12.46□□□□□ -0.42
VPS13A-204ENST00000376634 THRBP10828 461 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 PIWIL4Q7Z3Z4 852 aaKnown RBP12.46□□□□□ -0.42
VPS13A-204ENST00000376634 RIT1Q92963 219 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 FTHL17Q9BXU8 183 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 NINJ2Q9NZG7 142 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 ATPIF1Q9UII2 106 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 BCKDKO14874 412 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 MTHFRP42898 656 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 ETNPPLQ8TBG4 499 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 AENQ8WTP8 325 aaKnown RBP12.46□□□□□ -0.42
VPS13A-204ENST00000376634 C3orf14Q9HBI5 128 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 BPIFA1Q9NP55 256 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 TRPV5Q9NQA5 729 aa12.46□□□□□ -0.42
VPS13A-204ENST00000376634 DCLK1O15075 740 aa12.45□□□□□ -0.42
VPS13A-204ENST00000376634 ZNF143P52747 638 aaPredicted RBP12.45□□□□□ -0.42
VPS13A-204ENST00000376634 LIPEQ05469 1076 aa12.45□□□□□ -0.42
VPS13A-204ENST00000376634 USF2Q15853 346 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms