RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 CDH18Q13634 790 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 SQLEQ14534 574 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 E2F5Q15329 346 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 GSTA3Q16772 222 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 HSF5Q4G112 596 aaPredicted RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ARMC12Q5T9G4 340 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 SDHAF4Q5VUM1 108 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 PRMT9Q6P2P2 845 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 PGM2L1Q6PCE3 622 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 PRSS55Q6UWB4 352 aaPredicted RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 FRMD7Q6ZUT3 714 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ISCA2Q86U28 154 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ALYREFQ86V81 257 aaKnown RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 SLC41A1Q8IVJ1 513 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 FAM9CQ8IZT9 166 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 PGBD5Q8N414 524 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 CARNMT1Q8N4J0 409 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 KIF2BQ8N4N8 673 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 SLC25A41Q8N5S1 370 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ZNF781Q8N8C0 355 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 KDM1BQ8NB78 822 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 RBM15BQ8NDT2 890 aaKnown RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 CATSPER1Q8NEC5 780 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 KCTD4Q8WVF5 259 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 CLP1Q92989 425 aaKnown RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ARMC5Q96C12 935 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ROPN1LQ96C74 230 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 NXNL1Q96CM4 212 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ZNF419Q96HQ0 510 aaPredicted RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 LRIG1Q96JA1 1093 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ZNF641Q96N77 438 aaPredicted RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 FEM1AQ9BSK4 669 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 SPON2Q9BUD6 331 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 SLC25A23Q9BV35 468 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 CPEB1Q9BZB8 566 aaKnown RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 CRISPLD1Q9H336 500 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 DENND2DQ9H6A0 471 aaPredicted RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 C11orf49Q9H6J7 331 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ATP13A3Q9H7F0 1226 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ZBTB26Q9HCK0 441 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 LATS2Q9NRM7 1088 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ABCB8Q9NUT2 735 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 PLA2G4CQ9UP65 541 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 RAI2Q9Y5P3 530 aa8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 OAS3Q9Y6K5 1087 aaKnown RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 ZNF638Q14966 1978 aaKnown RBP8.71□□□□□ -1.02
SNRNP40-202ENST00000373720 NUP205Q92621 2012 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 CCDC195A0A1B0GUA6 201 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 F5H423 210 aaPredicted RBP8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 IFRD1O00458 451 aaPredicted RBP8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 SLC9A3R1O14745 358 aaPredicted RBP8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 KPNA5O15131 536 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 PHGDHO43175 533 aaKnown RBP8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 PEX1O43933 1283 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 PEX11AO75192 247 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 GPC4O75487 556 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 ZMPSTE24O75844 475 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 PSMG1O95456 288 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 STAMBPO95630 424 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 IGSF6O95976 241 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 HMBSP08397 361 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 HNRNPA1P09651 372 aaKnown RBP eCLIP8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 SBK3P0C264 359 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 COX4I1P13073 169 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 PKMP14618 531 aaKnown RBP8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 CD1DP15813 335 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 GNAZP19086 355 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 SERPINA4P29622 427 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 CPOXP36551 454 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 ACVRL1P37023 503 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 PIK3CGP48736 1102 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 RGS4P49798 205 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 SCNN1BP51168 640 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 CCR3P51677 355 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 GTF2A1P52655 376 aaPredicted RBP8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 EPHA5P54756 1037 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 MTTPP55157 894 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 PKNOX1P55347 436 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 CCL23P55773 120 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 IL2P60568 153 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 STX1BP61266 288 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 SNRPD1P62314 119 aaKnown RBP8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 HTRA4P83105 476 aaPredicted RBP8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 MPP1Q00013 466 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 IRF9Q00978 393 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 TWF1Q12792 350 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 KLF10Q13118 480 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 PPIGQ13427 754 aaKnown RBP eCLIP8.7□□□□□ -1.024e-6■■□□□ 13.5
SNRNP40-202ENST00000373720 OLIG2Q13516 323 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 CYTH1Q15438 398 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 ARHGAP15Q53QZ3 475 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 RNF219Q5W0B1 726 aaPredicted RBP8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 GRAMD4Q6IC98 578 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 CXorf57Q6NSI4 855 aaKnown RBP8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 LILRA6Q6PI73 481 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 CNSTQ6PJW8 725 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 ZCCHC23Q6ZST2 131 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 TAS1R1Q7RTX1 841 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 SPATA19Q7Z5L4 167 aa8.7□□□□□ -1.02
SNRNP40-202ENST00000373720 PTAR1Q7Z6K3 402 aaPredicted RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms