RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ATP6V0D1P61421 351 aa22.38■■□□□ 1.17
TRIM28-202ENST00000341753 SNX17Q15036 470 aa22.38■■□□□ 1.17
TRIM28-202ENST00000341753 ARL13BQ3SXY8 428 aa22.38■■□□□ 1.17
TRIM28-202ENST00000341753 FBXO48Q5FWF7 155 aa22.38■■□□□ 1.17
TRIM28-202ENST00000341753 LDLRAP1Q5SW96 308 aa22.38■■□□□ 1.17
TRIM28-202ENST00000341753 TMEM207Q6UWW9 146 aa22.38■■□□□ 1.17
TRIM28-202ENST00000341753 ZUFSPQ96AP4 578 aa22.38■■□□□ 1.17
TRIM28-202ENST00000341753 ROPN1LQ96C74 230 aa22.38■■□□□ 1.17
TRIM28-202ENST00000341753 SEPHS2Q99611 448 aa22.38■■□□□ 1.17
TRIM28-202ENST00000341753 ZFYVE28Q9HCC9 887 aa22.38■■□□□ 1.17
TRIM28-202ENST00000341753 TRNAU1APQ9NX07 287 aaKnown RBP22.38■■□□□ 1.17
TRIM28-202ENST00000341753 BTRCQ9Y297 605 aa22.38■■□□□ 1.17
TRIM28-202ENST00000341753 RAD54BQ9Y620 910 aa22.38■■□□□ 1.17
TRIM28-202ENST00000341753 SERPINB7O75635 380 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 RASAL1O95294 804 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 SLC6A2P23975 617 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 MAP4P27816 1152 aaKnown RBP22.37■■□□□ 1.17
TRIM28-202ENST00000341753 AFF1P51825 1210 aaKnown RBP22.37■■□□□ 1.17
TRIM28-202ENST00000341753 SH3BP2P78314 561 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 CD300CQ08708 224 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 SCAPQ12770 1279 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 CYBRD1Q53TN4 286 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 ZNF467Q7Z7K2 595 aaPredicted RBP22.37■■□□□ 1.17
TRIM28-202ENST00000341753 OR52K2Q8NGK3 314 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 MYRFLQ96LU7 910 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 SLC9A7Q96T83 725 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 DNAJC15Q9Y5T4 150 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 PIP5K1BO14986 540 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 SLC4A1P02730 911 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 MYL3P08590 195 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 HOXD8P13378 290 aaPredicted RBP22.37■■□□□ 1.17
TRIM28-202ENST00000341753 DNAJB1P25685 340 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 CASP2P42575 452 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 NR1D2Q14995 579 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 OTUD3Q5T2D3 398 aaPredicted RBP22.37■■□□□ 1.17
TRIM28-202ENST00000341753 TBPL2Q6SJ96 375 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 NAT16Q8N8M0 369 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 ACDQ96AP0 544 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 TRIM15Q9C019 465 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 BRD8Q9H0E9 1235 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 GLOD4Q9HC38 313 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 MYLKQ15746 1914 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 AQP12BA6NM10 295 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 H3BMM5 538 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 CAPGP40121 348 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 LILRA4P59901 499 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 MFSD10Q14728 455 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 UNC50Q53HI1 259 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 IQSEC1Q6DN90 963 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 GALNT18Q6P9A2 607 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 NCCRP1Q6ZVX7 275 aaPredicted RBP22.37■■□□□ 1.17
TRIM28-202ENST00000341753 TLK2Q86UE8 772 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 AQP12AQ8IXF9 295 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 ATPAF2Q8N5M1 289 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 SMG8Q8ND04 991 aaKnown RBP22.37■■□□□ 1.17
TRIM28-202ENST00000341753 BPIFB6Q8NFQ5 453 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 UPF1Q92900 1129 aaKnown RBP eCLIP22.37■■□□□ 1.17
TRIM28-202ENST00000341753 VPS33AQ96AX1 596 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 ZNF560Q96MR9 790 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 DOK1Q99704 481 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 SEZ6LQ9BYH1 1024 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 FANCEQ9HB96 536 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 TREX1Q9NSU2 369 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 GDAP2Q9NXN4 497 aa22.37■■□□□ 1.17
TRIM28-202ENST00000341753 SMPD3Q9NY59 655 aaPredicted RBP22.37■■□□□ 1.17
TRIM28-202ENST00000341753 C1orf232A0A0U1RR37 186 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 TRIM64A6NGJ6 449 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 ADAM23O75077 832 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 GFAPP14136 432 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 NR4A1P22736 598 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 HCAR3P49019 387 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 CDKN2DP55273 166 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 NFATC3Q12968 1075 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 ZNF678Q5SXM1 525 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 UBXN11Q5T124 520 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 ZNF420Q8TAQ5 688 aaPredicted RBP22.36■■□□□ 1.17
TRIM28-202ENST00000341753 SGCDQ92629 289 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 NSUN5Q96P11 429 aaKnown RBP22.36■■□□□ 1.17
TRIM28-202ENST00000341753 IFT80Q9P2H3 777 aaPredicted RBP22.36■■□□□ 1.17
TRIM28-202ENST00000341753 ABCD2Q9UBJ2 740 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 NRCAMQ92823 1304 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 RRN3P2A6NIE6 340 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 ZNF189O75820 626 aaPredicted RBP22.36■■□□□ 1.17
TRIM28-202ENST00000341753 F2P00734 622 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 HLA-DQB2P05538 268 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 RPS9P46781 194 aaKnown RBP22.36■■□□□ 1.17
TRIM28-202ENST00000341753 ACADVLP49748 655 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 BCAP31P51572 246 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 PYCR3Q53H96 274 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 HECTD2Q5U5R9 776 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 CCDC126Q96EE4 140 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 SMOQ99835 787 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 MID1IP1Q9NPA3 183 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 NDFIP2Q9NV92 336 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 NDUFAF1Q9Y375 327 aa22.36■■□□□ 1.17
TRIM28-202ENST00000341753 TRIM43BA6NCK2 446 aa22.35■■□□□ 1.17
TRIM28-202ENST00000341753 OR51F1A6NGY5 319 aa22.35■■□□□ 1.17
TRIM28-202ENST00000341753 GLTPD2A6NH11 291 aa22.35■■□□□ 1.17
TRIM28-202ENST00000341753 LINC00032P0C843 101 aa22.35■■□□□ 1.17
TRIM28-202ENST00000341753 IMPDH1P20839 514 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms